Detailed information of deep learning profile BP000163.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000163.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR168KQC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.19 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4184 5502 6772 5140 4210 4763 4266 4562 5029 5137 5192 5387 4677 3331 4814 5597 2474 1212 12488 1857 3601 16101 462 7817 1558 427 594 3341 8262 1932 3091 7212 3604 5943 4626 5263 4693 4642 5390 6406 4497 5285 5514 5806 5461 5420 5389 5413 5360 5171 ]
C [ 5389 6283 4635 4495 4054 5263 7731 6923 6329 5785 5565 5051 5542 6889 4712 2827 14910 19097 1471 10655 7532 743 98 256 1110 122 1078 15021 1224 10630 6884 4991 4612 4188 3896 5604 6741 7711 6541 4561 5674 5003 4954 4884 5008 5160 5392 5261 5269 5372 ]
G [ 6534 4309 5025 5081 4832 5035 3789 4232 4843 5078 5008 4546 5339 3563 6577 8772 1914 386 3729 7651 2070 2406 20272 12746 11587 20204 17693 850 10314 6144 2319 6264 5428 4606 8612 5805 5356 3456 3742 5604 5760 5803 5638 4968 4954 5761 5679 5524 5532 5627 ]
T [ 4953 4966 4628 6344 7964 5999 5274 5343 4859 5060 5295 6076 5502 7277 4957 3864 1762 365 3372 897 7857 1810 228 241 6805 307 1695 1848 1260 2354 8766 2593 7416 6323 3926 4388 4270 5251 5387 4489 5129 4969 4954 5402 5637 4719 4600 4862 4899 4890 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.10 -0.04 0.07 -0.07 -0.04 -0.06 -0.01 0.03 -0.03 -0.02 0.03 -0.02 0.02 -0.00 0.00 0.01 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.00 0.14 0.20 -0.00 0.14 0.07 0.02 -0.01 -0.05 0.02 -0.04 -0.02 0.16 -0.01 0.09 0.06 0.04 0.02 0.01 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.09 0.07 -0.00 0.04 0.20 0.15 0.12 0.20 0.16 -0.02 0.16 0.06 0.00 0.04 0.03 0.00 0.05 0.02 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.03 -0.00 -0.02 -0.03 -0.08 -0.02 -0.05 0.07 -0.02 -0.03 -0.08 0.04 -0.04 0.02 -0.02 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 744

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 608

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 513

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 334

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 191

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages