Detailed information of deep learning profile BP000163.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000163.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR168KQC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.19 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4890 4899 4862 4600 4719 5637 5402 4954 4969 5129 4489 5387 5251 4270 4388 3926 6323 7416 2593 8766 2354 1260 1848 1695 307 6805 241 228 1810 7857 897 3372 365 1762 3864 4957 7277 5502 6076 5295 5060 4859 5343 5274 5999 7964 6344 4628 4966 4953 ]
C [ 5627 5532 5524 5679 5761 4954 4968 5638 5803 5760 5604 3742 3456 5356 5805 8612 4606 5428 6264 2319 6144 10314 850 17693 20204 11587 12746 20272 2406 2070 7651 3729 386 1914 8772 6577 3563 5339 4546 5008 5078 4843 4232 3789 5035 4832 5081 5025 4309 6534 ]
G [ 5372 5269 5261 5392 5160 5008 4884 4954 5003 5674 4561 6541 7711 6741 5604 3896 4188 4612 4991 6884 10630 1224 15021 1078 122 1110 256 98 743 7532 10655 1471 19097 14910 2827 4712 6889 5542 5051 5565 5785 6329 6923 7731 5263 4054 4495 4635 6283 5389 ]
T [ 5171 5360 5413 5389 5420 5461 5806 5514 5285 4497 6406 5390 4642 4693 5263 4626 5943 3604 7212 3091 1932 8262 3341 594 427 1558 7817 462 16101 3601 1857 12488 1212 2474 5597 4814 3331 4677 5387 5192 5137 5029 4562 4266 4763 4210 5140 6772 5502 4184 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.02 0.02 -0.04 0.04 -0.08 -0.03 -0.02 0.07 -0.05 -0.02 -0.08 -0.03 -0.02 -0.00 0.03 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.02 0.05 0.00 0.03 0.04 0.00 0.06 0.16 -0.02 0.16 0.20 0.12 0.15 0.20 0.04 -0.00 0.07 0.09 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.01 0.01 0.02 0.04 0.06 0.09 -0.01 0.16 -0.02 -0.04 0.02 -0.05 -0.01 0.02 0.07 0.14 -0.00 0.20 0.14 -0.00 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.01 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.03 0.03 -0.01 -0.06 -0.04 -0.07 0.07 -0.04 0.10 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 744

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 608

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 513

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 334

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 191

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages