Detailed information of deep learning profile BP000161.1

  1. Home
  2. Deep Learning Profile > BP000161.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in HFFc6 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000161.1
Cell line/tissue: HFFc6
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR163ULN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.14 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.08 0.05 0.14 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4143 3781 3484 4419 5193 4345 3474 4048 3227 3670 4259 4345 4124 4262 3918 2779 3851 4660 2203 1175 9326 1854 2888 12858 256 4639 1946 200 1085 3592 5469 2313 3142 5282 3149 4496 3586 4273 3948 4065 4234 4540 4067 4271 4312 4210 4221 4270 4208 4261 ]
C [ 3829 3233 4244 4864 3934 3580 3375 4142 6221 5647 4801 4432 4346 4120 4629 5511 3837 2309 11907 14586 1555 8169 6349 387 56 147 549 79 1683 9914 2177 7358 4916 3718 3724 3532 3746 4206 4579 5110 4592 3946 4157 4054 3954 4219 4158 4069 4155 4058 ]
G [ 4258 5228 5271 3507 3861 3932 3821 3841 3133 3227 3682 3958 3957 3444 3977 2749 5003 6586 1438 555 2358 5893 1679 1986 16258 11569 10056 16253 12485 1396 7494 4368 2520 4953 4354 3891 5953 4354 4573 3639 3710 4256 4501 4311 4459 4195 4137 4403 4442 4369 ]
T [ 4490 4478 3721 3930 3732 4863 6050 4689 4139 4176 3978 3985 4293 4894 4196 5681 4029 3165 1172 404 3481 804 5804 1489 150 365 4169 188 1467 1818 1580 2681 6142 2767 5493 4801 3435 3887 3620 3906 4184 3978 3995 4084 3995 4096 4204 3978 3915 4032 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.06 0.03 -0.05 -0.05 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.00 0.00 0.02 0.04 0.03 -0.02 0.10 0.16 -0.02 0.10 0.04 -0.02 -0.03 -0.06 -0.01 -0.03 -0.02 0.09 -0.01 0.05 0.03 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.04 -0.03 -0.03 0.05 0.04 -0.02 0.02 0.16 0.11 0.09 0.14 0.10 -0.02 0.09 0.03 -0.01 0.02 0.01 0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.01 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3146

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 847

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 679

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 267

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages