Detailed information of deep learning profile BP000160.1

  1. Home
  2. Deep Learning Profile > BP000160.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in CD14-positive monocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000160.1
Cell line/tissue: CD14-positive monocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR162KZY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 3662 3641 3717 4242 4141 3885 3947 3911 3453 3986 4012 3319 3407 3017 4644 5483 2263 6526 2113 1171 1637 1431 438 4598 247 175 1055 5893 579 2728 177 1034 2994 3828 5789 4209 4785 4123 3743 3618 4127 3816 4806 6948 4890 3173 3766 3517 4704 4611 ]
C [ 4503 4347 4587 4135 4045 4406 4534 4421 4327 3343 3043 4330 4486 6563 3860 4485 4911 2146 4420 7936 1186 12840 15221 9639 10654 15838 1774 1555 5901 2465 259 1247 6985 5292 2627 4168 3492 3798 4013 3696 3046 2773 3878 3653 4038 3975 3026 5709 5563 4106 ]
G [ 4161 4259 4107 3915 3952 3942 4032 4447 3812 4986 5747 5023 4408 3249 3403 3425 3886 5105 7861 1696 10669 1357 323 842 172 125 547 6387 8693 1180 15526 12578 1991 3770 5609 4411 4034 4368 4675 5192 6000 6945 4010 2847 3394 3544 5308 4216 3008 4023 ]
T [ 4107 4186 4022 4141 4295 4200 3920 3654 4841 4118 3631 3761 4132 3604 4526 3040 5373 2656 2039 5630 2941 805 451 1354 5360 295 13057 2598 1260 10060 471 1574 4463 3543 2408 3645 4122 4144 4002 3927 3260 2899 3739 2985 4111 5741 4333 2991 3158 3693 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.04 -0.03 0.06 -0.06 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.11 -0.02 0.11 0.14 0.09 0.11 0.15 0.01 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.04 -0.01 -0.06 -0.02 -0.01 0.04 0.11 -0.02 0.16 0.11 -0.01 0.03 0.05 0.01 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.05 0.04 -0.05 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.03 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 184

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages