Detailed information of deep learning profile BP000159.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000159.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR160GVO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.04 -0.00 -0.00 0.09 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.00 -0.00 0.11 0.17 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.16 0.08 0.05 0.15 0.10 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 2450 1878 1692 3475 5407 3256 1825 3046 1706 2281 3198 3376 3382 3441 2968 1319 2267 3767 887 114 9521 501 1697 11722 121 4365 640 242 510 1594 4743 1380 1829 4682 2202 4020 2570 3208 3042 2558 3367 4307 2466 3149 3380 3816 3262 3086 3247 3189 ]
C [ 3545 1965 3411 5069 2537 2310 1635 3095 6966 5561 4558 4118 3594 2921 3128 4650 2703 1053 11311 12933 383 8610 5901 277 42 62 429 161 606 10032 736 6708 4499 3250 2852 2594 2367 3919 4663 5814 4600 2551 4001 3265 3218 2973 3155 3363 3536 3607 ]
G [ 3330 5128 5680 1825 3196 3282 2576 2873 1550 1972 2832 3032 2903 2581 3563 1409 5368 6252 461 41 1979 3808 725 746 12907 8613 7770 12480 11150 543 7093 3913 1649 3894 3703 2968 5886 3574 3110 1796 2020 3818 3652 3678 3360 2919 3120 3952 3661 3575 ]
T [ 3807 4161 2349 2763 1992 4284 7096 4118 2910 3318 2544 2606 3253 4189 3473 5754 2794 2060 473 44 1249 213 4809 387 62 92 4293 249 866 963 560 1131 5155 1306 4375 3550 2309 2431 2317 2964 3145 2456 3013 3040 3174 3424 3595 2731 2688 2761 ]

Hypothetical CWM

   
A [ 0.02 0.00 -0.01 0.01 -0.01 -0.00 0.01 0.00 0.01 0.01 0.01 -0.02 -0.02 0.03 -0.01 -0.04 0.05 -0.03 -0.02 0.10 -0.05 0.05 -0.06 -0.05 -0.03 -0.00 0.02 -0.02 -0.00 0.03 -0.01 0.01 0.00 0.00 ]
C [ 0.00 0.00 -0.02 0.00 0.06 0.04 0.03 0.03 0.02 0.02 0.03 0.07 0.04 -0.02 0.13 0.17 -0.04 0.11 0.05 0.00 -0.02 -0.06 0.01 -0.03 -0.02 0.12 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.00 -0.00 -0.02 0.01 0.02 0.01 0.02 0.01 0.02 -0.01 0.05 0.06 -0.03 -0.01 0.09 0.04 -0.02 0.02 0.16 0.13 0.09 0.15 0.11 -0.02 0.11 0.04 -0.00 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.01 0.01 0.04 0.01 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.03 -0.00 -0.01 -0.04 -0.07 -0.04 -0.07 0.06 -0.06 -0.06 -0.08 0.02 -0.04 -0.01 -0.03 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 194

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages