Detailed information of deep learning profile BP000158.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastroesophageal sphincter using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000158.1
Cell line/tissue: gastroesophageal sphincter
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR146BGM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.02 0.00 0.00 0.00 0.00 0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4915 4461 4166 5933 7476 5467 4232 4991 4216 4725 5237 5574 5584 5755 5067 3297 5040 5970 2198 704 14061 1437 3587 17320 378 8152 1626 512 745 3618 8366 2249 3278 7686 3913 6372 4695 5426 5092 4662 5642 6945 4694 5544 5885 6227 5772 5553 5730 5695 ]
C [ 5259 4001 5575 6690 4680 4436 3727 5399 8764 7429 6840 6014 5718 5123 5693 7173 4545 2560 16447 20746 1164 12156 8422 938 141 448 1263 317 1304 15112 1422 10727 6987 5230 4590 4233 3974 5898 7127 8237 6874 4496 5963 5078 5018 4893 5034 5294 5486 5426 ]
G [ 5467 7369 7178 4166 5153 5245 4874 4983 3559 3964 4798 5097 4980 4448 5368 3432 7144 9254 1741 269 3566 7556 1969 2187 21195 13054 11967 20671 18029 1118 10796 6556 2676 6438 5838 4885 9023 5958 5265 3416 3702 5900 5848 6028 5624 5010 5069 6019 5754 5751 ]
T [ 6271 6081 4993 5123 4603 6764 9079 6539 5373 5794 5037 5227 5630 6586 5784 8010 5183 4128 1526 193 3121 763 7934 1467 198 258 7056 412 1834 2064 1328 2380 8971 2558 7571 6422 4220 4630 4428 5597 5694 4571 5407 5262 5385 5782 6037 5046 4942 5040 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.04 0.05 -0.05 -0.04 -0.05 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.03 0.05 0.04 -0.01 0.12 0.18 -0.02 0.12 0.06 0.00 -0.02 -0.05 0.01 -0.03 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.00 0.02 ]
G [ 0.01 0.02 0.01 0.01 0.00 0.04 0.06 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.18 0.13 0.10 0.17 0.13 -0.03 0.13 0.05 -0.00 0.03 0.03 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.02 -0.04 -0.07 -0.03 -0.05 0.06 -0.03 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 562

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages