Detailed information of deep learning profile BP000157.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000157.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR145HBC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.16 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3430 4635 5728 4300 3292 3870 3351 3674 4060 4244 4489 4523 3944 2655 3798 4673 1852 525 11029 1311 2791 13796 306 6602 1188 281 353 2598 6912 1631 2398 6072 2949 5054 3733 4280 3903 3644 4495 5472 3606 4357 4611 4875 4459 4351 4460 4416 4412 4230 ]
C [ 4352 5231 3742 3473 3063 4259 6470 5794 5353 4748 4442 3969 4409 5431 3654 2149 12608 16302 1085 8809 6600 560 96 147 779 79 504 12626 857 8897 5590 4274 3653 3306 3182 4709 5644 6504 5392 3626 4669 4035 3953 3943 3986 4204 4327 4365 4340 4522 ]
G [ 5506 3354 4108 4111 4012 4030 3000 3313 3832 4121 3981 3699 4347 2916 5601 7213 1477 272 2521 6502 1609 1707 16725 10350 9291 16731 15083 559 8646 5020 1816 5098 4568 3769 7266 4631 4314 2699 2976 4614 4721 4782 4437 4025 4126 4769 4614 4587 4410 4583 ]
T [ 3998 4066 3708 5402 6919 5127 4465 4505 4041 4173 4374 5095 4586 6284 4233 3251 1349 187 2651 664 6286 1223 159 187 6028 195 1346 1503 871 1738 7482 1842 6116 5157 3105 3666 3425 4439 4423 3574 4290 4112 4285 4443 4715 3962 3885 3918 4124 3951 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.02 0.11 0.05 0.00 -0.02 -0.06 0.00 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.17 0.12 0.10 0.16 0.12 -0.03 0.12 0.05 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.01 0.00 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.05 0.06 -0.03 -0.03 -0.06 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2117

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 227

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages