Detailed information of deep learning profile BP000156.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000156.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR138FTN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4343 4419 4338 4132 4303 4868 4772 4557 4464 4583 3938 4763 4677 3690 3976 3358 5748 6600 2204 7967 2076 1134 1763 1610 299 6169 221 178 1355 6886 738 3023 244 1426 3457 4595 6583 4944 5441 4787 4434 4316 4890 4672 5509 7471 5723 3921 4397 4283 ]
C [ 5087 4787 5061 5059 5093 4534 4507 5100 5207 5145 4933 3381 3140 4914 5136 7879 4024 4935 5514 1974 5448 9271 733 15971 18042 10463 11440 18237 1887 1770 7022 3046 311 1550 7959 5916 3162 4624 4099 4371 4524 4260 3645 3275 4441 4276 4658 4443 3673 6134 ]
G [ 4784 4789 4638 4810 4621 4465 4345 4225 4441 5129 4046 5942 6892 6023 4905 3564 3618 4062 4519 6196 9520 1064 13282 731 124 769 172 84 532 7127 9477 1222 17343 13708 2336 4027 6171 5034 4533 4965 5281 5656 6371 7267 4740 3393 3863 4057 5766 4762 ]
T [ 4609 4828 4786 4822 4806 4956 5199 4941 4711 3966 5906 4737 4114 4196 4806 4022 5433 3226 6586 2686 1779 7354 3045 511 358 1422 6990 324 15049 3040 1586 11532 925 2139 5071 4285 2907 4221 4750 4700 4584 4591 3917 3609 4133 3683 4579 6402 4987 3644 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.03 -0.08 -0.04 -0.04 0.06 -0.06 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.02 0.05 0.14 -0.03 0.14 0.19 0.11 0.14 0.19 0.02 -0.03 0.05 0.08 -0.04 -0.03 0.06 0.04 0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.02 0.14 -0.04 -0.06 -0.01 -0.08 -0.04 -0.01 0.06 0.11 -0.03 0.19 0.12 -0.01 0.04 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.04 -0.02 -0.03 0.02 -0.02 -0.06 -0.05 -0.07 0.06 -0.06 0.10 -0.02 -0.02 0.05 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1058

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages