Detailed information of deep learning profile BP000155.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in lower lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000155.1
Cell line/tissue: lower lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR133AFF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3940 3498 3354 4790 6078 4362 3329 4027 3279 3658 4203 4373 4437 4444 3953 2564 3907 4787 1689 513 11341 1143 2814 14158 241 6505 1197 282 575 2914 6789 1877 2648 6087 3174 5029 3865 4452 4053 3807 4554 5512 3741 4447 4642 4959 4636 4505 4554 4503 ]
C [ 4137 3090 4407 5385 3628 3379 2922 4238 7039 6102 5312 4878 4585 4097 4595 5731 3728 1991 13402 16636 1009 9650 6634 519 83 198 773 111 1159 11851 1372 8458 5482 4138 3577 3374 3220 4686 5606 6376 5378 3739 4766 4092 3981 4001 3985 4142 4407 4346 ]
G [ 4392 5992 5781 3246 4162 4180 3710 3941 2744 3116 3890 4074 3881 3610 4206 2682 5616 7350 1235 189 2575 6123 1370 1741 17031 10561 9870 16878 14275 1001 8274 5125 2032 5071 4659 3856 7177 4716 4346 2812 3083 4570 4587 4700 4558 4045 4115 4751 4612 4588 ]
T [ 5022 4911 3949 4070 3623 5570 7530 5285 4429 4615 4086 4166 4588 5340 4737 6514 4240 3363 1165 153 2566 575 6673 1073 136 227 5651 220 1482 1725 1056 2031 7329 2195 6081 5232 3229 3637 3486 4496 4476 3670 4397 4252 4310 4486 4755 4093 3918 4054 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.01 0.01 0.02 0.05 0.03 -0.02 0.11 0.17 -0.03 0.11 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.03 0.11 -0.02 0.06 0.04 0.02 0.01 0.00 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.02 0.07 0.04 -0.03 0.02 0.16 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.07 -0.03 -0.05 0.06 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1777

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 581

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 337

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 52

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages