Detailed information of deep learning profile BP000154.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000154.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR130TQM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.14 0.05 0.06 0.15 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4252 4288 4171 3985 4150 4632 4581 4318 4375 4408 3913 4627 4463 3591 3837 3262 5472 6367 2150 7908 1910 1073 1574 1429 228 6146 169 176 1391 6648 746 2799 312 1450 3375 4474 6399 4654 5230 4628 4313 4211 4723 4464 5237 7105 5518 3871 4230 4001 ]
C [ 4651 4556 4634 4750 4753 4213 4238 4761 4791 4807 4611 3056 3001 4608 4653 7485 3856 4671 5196 1604 4893 8821 578 15390 17230 9766 10815 17236 1845 1743 6514 2586 499 1594 7414 5625 3017 4475 3724 4130 4230 3938 3430 3221 4108 4125 4261 4193 3548 5670 ]
G [ 4579 4447 4543 4531 4312 4312 4173 4092 4190 4812 3931 5597 6552 5600 4679 3339 3348 3711 4252 5831 9387 938 12993 619 91 657 138 128 550 6542 9082 1300 16271 12725 2232 3757 5663 4612 4331 4647 4940 5331 5911 6688 4375 3216 3651 3861 5275 4626 ]
T [ 4386 4577 4520 4602 4653 4711 4876 4697 4512 3841 5413 4588 3852 4069 4699 3782 5192 3119 6270 2525 1678 7036 2723 430 319 1299 6746 328 14082 2935 1526 11183 786 2099 4847 4012 2789 4127 4583 4463 4385 4388 3804 3495 4148 3422 4438 5943 4815 3571 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.07 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.02 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.11 -0.03 0.11 0.14 0.09 0.11 0.15 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.00 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.03 -0.01 -0.05 -0.02 0.01 0.04 0.10 -0.02 0.15 0.09 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.03 -0.06 0.05 -0.05 0.08 -0.01 -0.01 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 852

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 670

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages