Detailed information of deep learning profile BP000153.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural progenitor cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000153.1
Cell line/tissue: neural progenitor cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR125NBL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.13 0.05 0.07 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4907 4593 4754 5036 5061 4799 4846 4922 4607 5171 4833 4208 4454 4003 5864 6676 3350 7554 3269 1986 2354 2040 737 5222 417 269 1787 7436 939 4343 389 1438 3915 4843 6902 5109 5948 5175 4990 4767 5071 4764 5920 7862 5949 4343 4647 4468 5738 5691 ]
C [ 5415 5738 5389 5132 5095 5602 5519 5582 5384 4571 4214 5540 5473 7651 4959 5521 6059 3054 5311 9413 1865 14808 18585 12171 14308 19857 2759 2068 7518 2847 626 1763 8459 6328 3456 5149 4395 4955 4913 4589 3966 3695 4847 4874 5007 4816 4147 6999 6749 5293 ]
G [ 5243 5296 5122 5197 5156 4955 5097 5367 5016 5739 6935 6168 5503 4498 4309 4509 4767 6258 9388 2716 12008 2410 564 899 238 115 557 7725 10279 1685 18593 15207 2650 4877 7049 5803 5174 5585 5658 6294 7320 8314 5052 3930 4502 4676 6414 5297 3920 5042 ]
T [ 5054 4992 5354 5254 5307 5263 5157 4748 5612 5138 4637 4703 5189 4467 5487 3913 6443 3753 2651 6504 4392 1361 733 2327 5656 378 15516 3390 1883 11744 1011 2211 5595 4571 3212 4558 5102 4904 5058 4969 4262 3846 4800 3953 5161 6784 5411 3855 4212 4593 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.05 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.00 0.10 0.13 0.09 0.11 0.15 0.02 -0.01 0.04 0.05 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.00 0.09 -0.02 -0.04 -0.01 -0.06 -0.03 -0.01 0.04 0.09 -0.01 0.15 0.09 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.04 -0.05 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 506

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 218

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 148

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 30

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages