Detailed information of deep learning profile BP000152.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SU-DHL-6 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000152.1
Cell line/tissue: SU-DHL-6
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR125DKL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.06 0.16 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4657 4472 4083 5331 6215 5030 4003 4781 4054 4370 4796 4925 4956 5042 4626 3237 4454 5362 2441 1082 11263 2024 3291 15192 411 5982 1694 391 857 3561 6920 2143 3343 6468 3543 5342 4292 5059 4686 4580 4987 5802 4570 5269 5308 5263 5126 5171 5080 5188 ]
C [ 4827 4022 5203 5824 4672 4411 3975 4969 7406 6731 6120 5653 5456 5041 5531 6632 4715 2812 14156 17957 1977 9880 7186 633 124 168 742 190 1573 13434 1943 10264 6322 4896 4501 4335 4207 5293 6003 6795 5952 4711 5431 4912 4703 5060 5016 4947 5087 5009 ]
G [ 5285 6318 6386 4195 4911 4837 4882 4774 3813 4058 4454 4800 4885 4332 4926 3537 6252 8473 1999 723 3026 7327 2316 2523 19454 13770 11570 19248 16088 1221 9836 5043 2415 5919 5107 4566 7772 5427 5527 3979 4232 5271 5460 5286 5472 4940 5067 5412 5546 5349 ]
T [ 5476 5433 4573 4895 4447 5967 7385 5721 4972 5086 4875 4867 4948 5830 5162 6839 4824 3598 1649 483 3979 1014 7452 1897 256 325 6239 416 1727 2029 1546 2795 8165 2962 7094 6002 3974 4466 4029 4891 5074 4461 4784 4778 4762 4982 5036 4715 4532 4699 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.09 -0.05 0.04 -0.06 -0.05 -0.06 -0.02 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.01 0.11 0.05 0.00 -0.02 -0.06 -0.00 -0.03 -0.02 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.00 0.04 0.06 -0.02 -0.01 0.07 0.05 -0.00 0.03 0.17 0.13 0.10 0.17 0.13 -0.02 0.12 0.03 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.02 -0.05 0.06 -0.02 -0.04 -0.07 0.02 -0.04 0.01 -0.03 -0.05 -0.01 0.03 -0.03 0.03 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 194

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages