Detailed information of deep learning profile BP000151.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in CD8-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000151.1
Cell line/tissue: CD8-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR116AKQ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.14 0.04 0.06 0.15 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3518 3465 3542 4298 4047 3836 3750 3715 3195 3963 3805 3017 3152 2829 4511 5412 1825 6541 1715 864 1487 1317 276 5077 204 139 966 5635 532 2233 186 1030 2684 3605 5920 4076 4768 4008 3633 3565 4093 3786 4668 6827 5012 3066 3666 3459 4501 4518 ]
C [ 4353 4414 4538 3842 3736 4149 4517 4349 4391 2683 2598 4045 4353 6788 3781 4408 4817 1892 4563 8050 824 13204 15238 9196 9982 15498 1396 1438 5473 2614 215 1252 7186 5484 2582 4222 3358 3576 3874 3518 2916 2559 3788 3652 3923 3916 2970 5621 5640 3998 ]
G [ 4203 4249 3984 3857 3741 3876 3918 4623 3455 5260 6304 5349 4457 2954 3135 3358 3899 5308 8077 1085 11456 978 194 765 219 117 594 6458 8896 1008 15151 12145 1864 3582 5227 4143 3752 4363 4688 5200 5793 6792 3931 2665 3216 3375 5196 4189 2851 4040 ]
T [ 3924 3870 3934 4001 4474 4137 3813 3311 4957 4092 3291 3587 4036 3427 4571 2820 5457 2257 1643 5999 2231 499 290 960 5593 244 13042 2467 1097 10143 446 1571 4264 3327 2269 3557 4120 4051 3803 3715 3196 2861 3611 2854 3847 5641 4166 2729 3006 3442 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 0.00 0.02 0.01 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.01 0.03 0.10 -0.03 0.11 0.15 0.08 0.11 0.15 0.01 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 0.00 0.02 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.06 -0.02 0.11 -0.03 -0.03 0.00 -0.05 -0.01 -0.00 0.04 0.10 -0.02 0.15 0.10 -0.01 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ 0.00 0.00 0.02 -0.01 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.04 0.08 -0.02 -0.02 0.04 -0.03 -0.00 0.02 -0.02 -0.01 0.01 0.01 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages