Detailed information of deep learning profile BP000150.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000150.1
Cell line/tissue: pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR113COJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3610 3496 3639 4561 4237 4002 3906 3915 3176 4078 3955 3060 3301 2937 4640 5593 1669 6657 1427 736 1367 1237 199 5829 134 72 654 6266 373 1741 72 860 2758 3728 6850 4404 5175 4107 3530 3411 4403 4033 5059 7746 5446 2966 3709 3487 4742 4788 ]
C [ 4399 4459 4704 3804 3542 4255 4546 4416 4511 2364 2270 3929 4374 7163 3581 4580 4722 1836 5170 8186 636 14011 15870 9309 9763 16140 1078 1134 5205 2316 68 826 7481 6123 2259 4247 3227 3551 3770 3564 2745 2339 3707 3577 3887 4064 2750 5999 6100 4218 ]
G [ 4303 4263 3992 3778 3708 3821 3890 4785 3263 5632 6898 5701 4686 2912 3130 3355 4039 5650 8218 815 12218 709 105 560 99 52 449 6649 10108 626 16040 13374 1575 3278 5320 3966 3604 4384 4973 5506 6127 7351 4019 2374 3023 3349 5557 4310 2759 4050 ]
T [ 4101 4195 4078 4270 4926 4335 4071 3297 5463 4339 3290 3723 4052 3401 5062 2885 5983 2270 1598 6676 2192 456 239 715 6417 149 14232 2364 727 11730 233 1353 4599 3284 1984 3796 4407 4371 4140 3932 3138 2690 3628 2716 4057 6034 4397 2617 2812 3357 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.02 -0.03 0.02 -0.02 -0.06 -0.03 -0.00 -0.04 0.01 -0.07 -0.05 -0.04 0.05 -0.05 -0.03 -0.07 -0.04 -0.01 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.00 0.03 0.10 -0.03 0.10 0.13 0.08 0.10 0.14 0.01 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.01 0.02 0.04 -0.03 0.10 -0.03 -0.03 -0.00 -0.06 -0.02 -0.01 0.04 0.09 -0.04 0.14 0.10 -0.02 0.03 0.05 0.02 0.01 0.02 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.06 0.04 -0.04 0.08 -0.02 -0.03 0.03 -0.03 -0.02 0.02 -0.02 -0.02 -0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 255

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 164

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages