Detailed information of deep learning profile BP000149.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000149.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR107GWZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.01 0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.06 0.13 0.07 0.00 0.03 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 ]

Frequency matrix

       
A [ 4403 4130 3829 3407 3085 4582 6338 4329 3090 4120 2878 3637 4380 4497 4149 4143 3573 2398 3540 5282 1438 721 10594 1422 2474 13205 206 3546 2080 842 2006 3895 5171 3051 3626 5025 3774 4606 3818 4421 4074 4249 4549 4602 4180 4234 4300 4268 4319 4356 ]
C [ 3677 4363 3675 2610 4034 5272 3423 3249 2628 3893 7525 6164 5026 4327 4189 3749 4732 5700 4027 1894 13242 15281 1071 8936 6307 335 63 123 874 808 2110 8103 2784 6169 4373 3530 3398 3409 3542 3930 4288 4595 4172 3719 3959 3832 3915 3927 3864 3855 ]
G [ 4473 4297 3970 5525 5792 2773 3455 3683 3189 3440 2272 2463 3220 3656 3378 3159 3631 2176 5028 6115 919 217 1549 5465 1114 1767 16031 12256 9674 13405 10296 1965 6296 4163 2904 4513 4297 3861 5335 4176 4370 3487 3673 4105 4108 4119 4030 3902 3935 4095 ]
T [ 3877 3640 4956 4888 3519 3803 3214 5169 7523 4977 3755 4166 3804 3950 4714 5379 4494 6156 3835 3139 831 211 3216 607 6535 1123 130 505 3802 1375 2018 2467 2179 3047 5527 3362 4961 4554 3735 3903 3698 4099 4036 4004 4183 4245 4185 4333 4312 4124 ]

Hypothetical CWM

   
A [ 0.03 0.01 -0.01 0.01 -0.01 -0.01 0.00 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.07 0.02 -0.05 -0.06 -0.04 -0.01 0.01 -0.01 -0.01 0.01 -0.01 ]
C [ -0.01 -0.02 -0.03 -0.00 0.06 0.04 0.03 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.13 0.18 -0.03 0.11 0.04 -0.04 -0.04 -0.09 -0.02 -0.04 -0.03 0.08 -0.00 0.03 0.02 0.01 0.00 ]
G [ 0.00 0.00 -0.02 -0.01 -0.04 -0.01 0.00 -0.00 0.00 -0.00 0.00 -0.02 0.04 0.04 -0.05 -0.04 0.06 0.05 -0.05 0.02 0.18 0.13 0.09 0.14 0.09 -0.01 0.07 0.02 -0.00 0.01 0.01 ]
T [ -0.02 0.01 0.04 0.01 -0.01 -0.00 -0.01 -0.00 0.00 0.01 0.01 0.03 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.05 -0.05 -0.06 0.00 -0.04 -0.01 -0.03 -0.04 -0.01 0.01 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 312

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 238

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 108

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages