Detailed information of deep learning profile BP000148.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000148.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR105KGD
Model: BPNet
Download trained model
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.19 0.06 0.09 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4961 4781 4848 5293 5282 4905 4966 5064 4554 5369 5241 4313 4530 3977 6109 7159 2781 8354 2773 1551 2039 1881 490 6333 344 281 1866 7274 897 3774 360 1689 3912 5060 7061 5258 6065 5266 4949 5020 5304 5152 6038 7747 6191 4531 4871 4736 5658 5837 ]
C [ 5742 5912 5832 5432 5322 5908 5955 6091 5834 4248 3922 5612 5968 8564 4992 5811 6404 2771 6285 10158 1471 17044 20141 11861 13779 20629 2677 2303 7975 4108 473 2118 9022 6645 3706 5420 4742 5237 5388 5006 4376 4057 5328 5178 5412 5278 4653 6754 6981 5546 ]
G [ 5471 5439 5465 5193 5134 5114 5292 5765 4913 6563 7713 6860 5749 4357 4472 4682 5406 6999 10183 1966 14055 1637 282 1157 319 120 822 8337 10699 1644 19146 15174 2956 4926 7238 5995 5337 5792 5916 6485 7266 8000 5398 4281 4740 4856 6470 5669 4469 5237 ]
T [ 5326 5368 5355 5582 5762 5573 5287 4580 6199 5320 4624 4715 5253 4602 5927 3848 6909 3376 2259 7825 3935 938 587 2149 7058 470 16135 3586 1929 11974 1521 2519 5610 4869 3495 4827 5356 5205 5247 4989 4554 4291 4736 4294 5157 6835 5506 4341 4392 4880 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.03 0.00 -0.05 0.03 -0.09 -0.05 -0.03 0.06 -0.06 -0.04 -0.10 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.05 0.00 0.02 0.03 -0.01 0.06 0.16 -0.02 0.15 0.20 0.12 0.15 0.21 0.03 -0.02 0.06 0.09 -0.04 -0.03 0.07 0.05 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.06 0.08 -0.01 0.15 -0.03 -0.05 0.00 -0.07 -0.04 -0.01 0.07 0.13 -0.02 0.21 0.13 -0.02 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.03 -0.02 -0.06 -0.06 -0.07 0.05 -0.06 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages