Detailed information of deep learning profile BP000147.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in activated B cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000147.1
Cell line/tissue: activated B cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR105HEC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ -0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.00 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.11 0.04 0.04 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 1934 1565 1483 2642 3547 2364 1543 2115 1471 1753 2328 2544 2505 2654 2269 1043 1774 2778 776 76 7156 369 1270 8606 73 3947 291 109 205 1149 3976 874 1215 3709 1671 3132 2053 2324 2226 1886 2443 3289 1876 2433 2602 2973 2440 2261 2466 2388 ]
C [ 2471 1561 2570 3402 1973 1731 1348 2294 4449 3791 3390 3113 2711 2040 2148 3116 1879 901 7942 9547 330 6137 4308 274 44 82 252 29 293 7621 308 5083 3506 2473 2008 1899 1634 2980 3585 4450 3557 1867 2904 2382 2320 2163 2356 2476 2509 2583 ]
G [ 2488 3739 3753 1545 2496 2318 2085 2267 1364 1616 2026 2053 2141 1927 2649 1202 3915 4478 469 36 1410 3001 638 473 9537 5611 5475 9518 8549 247 5142 3051 1032 2712 2784 2064 4382 2598 2137 1158 1287 2750 2585 2664 2370 2134 2190 2920 2687 2596 ]
T [ 2805 2833 1892 2109 1682 3285 4722 3022 2414 2538 1954 1988 2341 3077 2632 4337 2130 1541 511 39 802 191 3482 345 44 58 3680 42 651 681 272 690 3945 804 3235 2603 1629 1796 1750 2204 2411 1792 2333 2219 2406 2428 2712 2041 2036 2131 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 0.01 -0.02 -0.02 0.01 -0.01 -0.03 0.04 -0.02 -0.01 0.07 -0.03 0.04 -0.05 -0.02 -0.03 -0.01 0.02 -0.01 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.01 0.03 0.03 -0.01 0.08 0.12 -0.02 0.07 0.03 -0.01 -0.02 -0.04 -0.01 -0.04 -0.03 0.08 -0.03 0.04 0.02 0.01 0.01 -0.00 -0.00 0.01 ]
G [ -0.00 0.00 0.00 0.00 -0.00 0.02 0.04 -0.02 -0.02 0.04 0.03 -0.02 0.00 0.11 0.08 0.07 0.12 0.09 -0.02 0.08 0.02 -0.00 0.02 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.04 -0.03 -0.04 0.04 -0.03 -0.03 -0.06 0.02 -0.05 -0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 27

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 21

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages