Detailed information of deep learning profile BP000146.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000146.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR102CSD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3404 3373 3367 4043 3816 3600 3679 3765 3178 3905 3812 3005 3106 2821 4429 5160 1779 6267 1593 961 1454 1219 226 5425 203 136 927 5390 490 2372 132 1031 2807 3733 5585 4028 4495 3902 3604 3491 3928 3809 4430 6134 4745 3045 3361 3447 4111 4428 ]
C [ 3707 3936 3921 3408 3329 3796 3881 3791 3826 2520 2334 3657 3896 5977 3175 3864 4267 1626 4411 6681 594 12506 14143 7456 8456 14297 1316 1247 5512 1630 142 1103 6073 4677 2246 3526 3057 3236 3279 3239 2689 2340 3308 3202 3364 3513 2783 4688 5001 3608 ]
G [ 3687 3570 3471 3366 3291 3249 3396 3921 3021 4381 5240 4651 3845 2637 2703 2908 3345 4541 7019 944 10298 552 84 666 184 73 349 5713 7693 869 14035 11036 1725 2930 4563 3740 3305 3665 4045 4376 4813 5649 3617 2439 2840 3012 4358 3680 2595 3357 ]
T [ 3906 3825 3945 3887 4268 4059 3748 3227 4679 3898 3318 3391 3857 3269 4397 2772 5313 2270 1681 6118 2358 427 251 1157 5861 198 12112 2354 1009 9833 395 1534 4099 3364 2310 3410 3847 3901 3776 3598 3274 2906 3349 2929 3755 5134 4202 2889 2997 3311 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.10 -0.03 0.10 0.13 0.08 0.11 0.15 0.02 -0.01 0.04 0.06 -0.03 -0.02 0.04 0.03 -0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 0.00 -0.06 -0.02 -0.01 0.05 0.10 -0.02 0.16 0.10 -0.02 0.02 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.01 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3567

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 301

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages