Detailed information of deep learning profile BP000143.1

  1. Home
  2. Deep Learning Profile > BP000143.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000143.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR089NBS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.00 0.05 0.00 -0.00 0.07 0.01 0.00 0.00 0.00 -0.00 -0.00 0.01 0.00 0.00 0.01 -0.01 ]
C [ 0.03 0.16 0.22 0.04 0.11 0.07 -0.00 0.00 0.00 0.02 0.00 0.01 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.05 0.00 -0.00 0.01 0.03 0.01 0.01 0.19 0.12 0.08 0.22 0.11 -0.00 0.06 0.01 -0.00 0.01 -0.00 ]
T [ -0.00 0.00 0.00 -0.00 0.01 0.04 0.03 0.00 0.01 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.00 0.01 ]

Frequency matrix

       
A [ 7 3 0 18 0 2 16 3 4 0 1 1 6 10 4 6 6 6 3 3 8 3 5 4 4 2 6 2 4 5 4 6 7 4 5 9 7 5 5 6 7 8 6 5 8 8 7 5 5 9 ]
C [ 6 29 30 7 19 16 1 1 1 3 0 4 18 0 16 5 5 3 3 6 5 1 4 4 1 1 2 2 1 2 2 5 3 5 3 3 7 10 14 14 9 8 11 9 8 9 4 9 12 8 ]
G [ 17 0 1 5 9 5 9 28 23 15 30 22 4 21 11 7 19 10 18 21 11 23 18 16 22 26 20 24 16 22 18 20 19 18 21 17 15 13 5 5 9 8 10 13 14 10 11 11 10 10 ]
T [ 2 0 1 2 4 9 6 0 4 14 1 5 4 1 1 14 2 13 8 2 8 5 5 8 5 3 4 4 11 3 8 1 3 5 3 3 3 4 8 7 7 8 5 5 2 5 10 7 5 5 ]

Hypothetical CWM

   
A [ 0.03 -0.01 -0.03 0.05 -0.06 -0.01 0.09 -0.04 0.02 -0.08 -0.06 -0.06 -0.02 0.04 -0.01 0.00 0.04 -0.01 ]
C [ 0.01 0.18 0.22 0.03 0.17 0.08 0.00 -0.02 -0.03 0.02 -0.08 -0.01 0.14 -0.00 0.06 0.04 0.04 0.03 ]
G [ 0.06 -0.05 -0.06 0.04 0.03 -0.01 0.03 0.20 0.14 0.11 0.23 0.13 -0.04 0.12 0.04 -0.01 0.02 0.01 ]
T [ -0.03 -0.06 -0.08 -0.02 -0.04 0.06 0.01 -0.05 -0.06 0.02 -0.07 0.01 -0.00 -0.08 -0.01 0.04 -0.03 0.03 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 521

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 205

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages