Detailed information of deep learning profile BP000142.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in omental fat pad using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000142.1
Cell line/tissue: omental fat pad
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR089DTY
Model: BPNet
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Contribution weight matrix (CWM)

A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.04 -0.00 0.06 0.09 0.03 0.04 0.08 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 -0.00 0.05 -0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.04 -0.00 0.10 0.06 -0.00 0.00 0.01 -0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 1288 1229 1296 1820 1629 1541 1454 1435 1117 1537 1454 1130 1152 1055 1631 2044 514 2456 468 220 453 447 65 2210 54 61 286 1962 145 543 41 263 1039 1289 2829 1625 2055 1478 1221 1222 1563 1430 1967 3128 2052 1056 1319 1215 1878 1814 ]
C [ 1973 2099 2236 1714 1584 1799 2049 1981 2221 1139 1004 1531 2094 3245 1676 2074 2207 957 2093 3967 205 5860 6567 3926 4490 6577 537 556 2136 1433 69 464 3332 2978 906 2034 1530 1639 1653 1612 1269 1046 1718 1631 1843 1877 1189 2817 2760 1874 ]
G [ 2039 1911 1892 1735 1649 1856 1848 2274 1335 2605 3218 2703 2220 1280 1517 1673 1798 2559 3677 287 5498 313 86 432 133 119 326 3434 4343 313 6654 5636 701 1474 2408 1743 1563 2072 2373 2518 2857 3443 1777 1090 1398 1513 2633 1946 1255 1982 ]
T [ 1545 1606 1421 1576 1983 1649 1494 1155 2172 1564 1169 1481 1379 1265 2021 1054 2326 873 607 2371 689 225 127 277 2168 88 5696 893 221 4556 81 482 1773 1104 702 1443 1697 1656 1598 1493 1156 926 1383 996 1552 2399 1704 867 952 1175 ]

Hypothetical CWM

A [ 0.00 0.01 -0.03 0.02 -0.02 -0.05 -0.02 -0.01 -0.04 0.01 -0.06 -0.04 -0.05 0.02 -0.04 -0.04 -0.05 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ -0.00 0.00 0.01 -0.01 0.01 0.07 -0.03 0.07 0.09 0.05 0.07 0.08 0.00 -0.02 0.02 0.04 -0.03 -0.03 0.03 0.02 -0.01 0.00 -0.00 0.00 -0.00 ]
G [ -0.00 0.00 0.00 0.01 0.03 -0.03 0.07 -0.03 -0.03 -0.00 -0.03 -0.01 -0.01 0.02 0.06 -0.03 0.11 0.07 -0.02 0.01 0.03 0.00 0.00 0.01 0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.02 -0.02 -0.03 -0.06 0.02 -0.04 0.05 -0.02 -0.04 0.02 -0.03 -0.02 0.01 -0.02 -0.02 0.00 -0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages