Detailed information of deep learning profile BP000141.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in DOHH2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000141.1
Cell line/tissue: DOHH2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR084RDK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.09 0.06 0.17 0.12 -0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4224 4042 3775 4804 5828 4625 3762 4410 3777 3881 4621 4577 4592 4588 4301 3068 4194 5074 2367 1183 10308 2038 3308 13925 435 5749 1674 415 764 3222 6276 2048 3029 6109 3439 4992 4038 4879 4260 4258 4669 5374 4265 4805 4868 4777 4708 4781 4681 4631 ]
C [ 4544 3857 4875 5569 4434 4103 3702 4709 6993 6329 5612 5299 5078 4841 5205 6318 4533 2650 13125 16494 1972 9127 6444 666 117 175 721 200 1449 12683 1903 9597 6016 4544 4199 4075 3881 5046 5595 6398 5596 4629 5115 4595 4479 4782 4809 4672 4829 4731 ]
G [ 5064 6070 6022 4106 4592 4570 4642 4374 3633 3960 4284 4578 4604 4137 4687 3506 5794 7752 1981 811 2917 6803 2330 2431 18196 12711 11030 17985 15171 1143 9289 4741 2232 5585 4702 4388 7306 5018 5274 3817 3963 4815 5128 5133 5214 4759 4813 5135 5249 5227 ]
T [ 5178 5041 4338 4531 4156 5712 6904 5517 4607 4840 4493 4556 4736 5444 4817 6118 4489 3534 1537 522 3813 1042 6928 1988 262 375 5585 410 1626 1962 1542 2624 7733 2772 6670 5555 3785 4067 3881 4537 4782 4192 4502 4477 4449 4692 4680 4422 4251 4421 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.01 0.02 -0.00 -0.03 0.04 -0.01 -0.01 0.09 -0.05 0.04 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.01 0.03 -0.01 0.02 -0.00 0.01 ]
C [ 0.01 0.02 0.05 0.04 -0.01 0.12 0.18 -0.01 0.12 0.05 0.00 -0.03 -0.07 -0.01 -0.05 -0.04 0.14 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.06 -0.03 -0.03 0.07 0.05 -0.00 0.02 0.19 0.14 0.11 0.18 0.14 -0.02 0.13 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.08 -0.01 -0.05 0.07 -0.02 -0.04 -0.07 0.02 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.03 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages