Detailed information of deep learning profile BP000140.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000140.1
Cell line/tissue: tibial artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR079YAP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4180 4027 4228 5121 4828 4552 4422 4634 3725 4748 4751 3571 3784 3369 5502 6515 1928 7857 1780 1036 1601 1463 212 6393 175 137 1091 6686 622 2570 194 1290 3436 4421 6843 4943 5518 4793 4360 4229 4936 4671 5493 7584 5715 3785 4302 4179 5106 5189 ]
C [ 4761 4765 4970 4095 4014 4669 4911 4733 4759 2928 2734 4417 4849 7618 3840 4742 5288 1836 5491 8687 608 15701 17556 9636 10538 17657 1633 1529 6474 2641 211 1318 7567 5861 2854 4442 3698 3992 4184 4007 3226 2902 4153 3974 4269 4206 3361 5905 6069 4531 ]
G [ 4444 4505 4267 4093 4000 4043 4157 4932 3671 5749 6797 5977 4875 3180 3406 3665 4310 5923 9029 928 13172 572 70 846 186 75 530 6889 9854 992 17101 13603 2174 3753 5769 4569 4112 4584 4961 5531 6115 7019 4367 3023 3517 3815 5443 4577 3257 4285 ]
T [ 4752 4840 4672 4828 5295 4873 4647 3838 5982 4712 3855 4172 4629 3970 5389 3215 6611 2521 1837 7486 2756 401 299 1262 7238 268 14883 3033 1187 11934 631 1926 4960 4102 2671 4183 4809 4768 4632 4370 3860 3545 4124 3556 4636 6331 5031 3476 3705 4132 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.03 -0.09 -0.04 -0.04 0.06 -0.05 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.01 0.05 0.13 -0.02 0.13 0.17 0.10 0.14 0.18 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.06 -0.02 0.13 -0.03 -0.04 0.01 -0.06 -0.01 -0.00 0.06 0.12 -0.02 0.19 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.07 0.06 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2536

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages