Detailed information of deep learning profile BP000139.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in B cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000139.1
Cell line/tissue: B cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR075NRV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2169 2087 2112 2411 2399 2251 2210 2187 1984 2321 2211 1880 1922 1767 2650 3138 1302 3801 1200 696 920 824 147 2827 126 88 694 3309 369 1599 141 627 1640 2232 3209 2388 2704 2399 2134 2114 2417 2178 2633 3752 2783 1920 2201 2106 2595 2653 ]
C [ 2671 2697 2749 2561 2482 2679 2786 2758 2761 1987 1925 2637 2790 3984 2432 2750 3012 1306 2719 4884 665 7830 9358 5769 6446 9500 985 982 3480 1822 187 838 4185 3070 1703 2571 2203 2327 2412 2330 1935 1807 2381 2372 2471 2437 1942 3310 3389 2501 ]
G [ 2586 2637 2523 2428 2367 2409 2448 2760 2250 3038 3574 3124 2610 1986 2082 2139 2317 3155 4778 961 6642 769 106 503 134 59 415 3955 5176 787 9092 7294 1292 2391 3415 2645 2524 2683 2886 3082 3583 4052 2519 1822 2148 2216 3195 2596 1944 2501 ]
T [ 2347 2352 2389 2373 2525 2434 2329 2068 2778 2427 2063 2132 2451 2036 2609 1746 3142 1511 1076 3232 1546 350 162 674 3067 126 7679 1527 748 5565 353 1014 2656 2080 1446 2169 2342 2364 2341 2247 1838 1736 2240 1827 2371 3200 2435 1761 1845 2118 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.11 0.14 0.08 0.11 0.14 0.01 -0.01 0.04 0.06 -0.02 -0.03 0.05 0.03 -0.00 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.05 -0.01 -0.06 -0.01 -0.01 0.04 0.10 -0.02 0.15 0.10 -0.01 0.04 0.04 0.02 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.05 -0.05 -0.05 0.04 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 316

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 20

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages