Detailed information of deep learning profile BP000138.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000138.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR074SFL
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4471 4382 4428 5542 5148 4951 4790 4862 3980 5033 4946 3914 4037 3659 5725 6757 2320 7826 2061 1224 1899 1719 425 6600 247 142 975 7462 498 2455 119 1112 3528 4584 7858 5289 6180 5080 4561 4342 5291 4786 6097 9168 6379 3769 4521 4293 5722 5681 ]
C [ 5254 5307 5642 4525 4544 5031 5527 5287 5396 3240 3026 4732 5299 8348 4453 5475 5762 2474 6126 9292 1268 15945 18560 11017 11981 19369 1758 1451 6467 3288 133 1145 8773 6994 2793 5056 4066 4375 4621 4352 3352 2856 4458 4135 4786 4705 3421 7120 7110 5012 ]
G [ 5169 5085 4832 4636 4432 4636 4637 5614 4023 6472 7837 6538 5578 3602 3765 4070 4772 6635 9447 1626 13646 1369 433 995 246 93 620 7890 11865 869 19167 15897 2026 4120 6631 5018 4446 5267 5649 6508 7326 8814 4780 3047 3760 4038 6588 5036 3304 4870 ]
T [ 4963 5083 4955 5154 5733 5239 4903 4094 6458 5112 4048 4673 4943 4248 5914 3555 7003 2922 2223 7715 3044 824 439 1245 7383 253 16504 3054 1027 13245 438 1703 5530 4159 2575 4494 5165 5135 5026 4655 3888 3401 4522 3507 4932 7345 5327 3408 3721 4294 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.02 -0.05 -0.02 0.00 -0.04 0.01 -0.07 -0.04 -0.04 0.04 -0.05 -0.03 -0.07 -0.03 -0.02 -0.01 0.01 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.04 -0.02 0.10 -0.03 -0.03 0.01 -0.06 -0.02 -0.01 0.05 0.10 -0.03 0.16 0.10 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.04 -0.04 -0.06 0.04 -0.05 0.07 -0.03 -0.03 0.03 -0.03 -0.02 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages