Detailed information of deep learning profile BP000137.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000137.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR073TPC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3269 4524 5681 4115 3269 3809 3285 3570 4022 4140 4231 4332 3805 2645 3926 4501 1982 741 10419 1384 2781 13438 305 6196 1508 292 439 2813 6552 1775 2536 5856 2989 4852 3682 4331 3789 3655 4367 5197 3622 4244 4443 4697 4372 4317 4386 4385 4375 4140 ]
C [ 4458 5138 3682 3563 3127 4254 6554 5738 5182 4784 4460 4126 4496 5659 3679 2142 12319 15879 1100 8156 6800 573 100 207 915 103 762 12007 1045 8344 5409 4025 3638 3397 3222 4434 5345 5996 5282 3729 4632 4022 3892 4026 3989 4178 4292 4200 4191 4332 ]
G [ 5447 3362 4136 4144 3874 4102 2997 3327 3874 4074 4013 3645 4242 2877 5312 7171 1462 214 2676 6789 1655 1779 16419 10386 9049 16402 14514 676 8285 5053 1999 5161 4563 3803 6989 4619 4485 3070 3159 4522 4628 4715 4600 4070 4150 4665 4572 4526 4412 4643 ]
T [ 3836 3986 3511 5188 6740 4845 4174 4375 3932 4012 4306 4907 4467 5829 4093 3196 1247 176 2815 681 5774 1220 186 221 5538 213 1295 1514 1128 1838 7066 1968 5820 4958 3117 3626 3391 4289 4202 3562 4128 4029 4075 4217 4499 3850 3760 3899 4032 3895 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.04 -0.03 -0.02 0.10 -0.07 0.06 -0.07 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.01 0.01 0.02 0.06 0.04 -0.02 0.13 0.20 -0.03 0.12 0.05 -0.02 -0.03 -0.08 -0.00 -0.05 -0.04 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.06 -0.04 -0.03 0.08 0.05 -0.02 0.02 0.19 0.14 0.11 0.19 0.14 -0.02 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.02 0.01 0.03 -0.00 -0.01 -0.04 -0.09 -0.03 -0.06 0.06 -0.04 -0.03 -0.08 0.03 -0.05 0.01 -0.03 -0.06 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4672

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 37

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages