Detailed information of deep learning profile BP000135.1

  1. Home
  2. Deep Learning Profile > BP000135.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in OCI-LY1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000135.1
Cell line/tissue: OCI-LY1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR072EUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.14 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.15 0.10 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4864 4624 4361 5694 6728 5285 4267 4930 4287 4711 5117 5236 5289 5334 4870 3544 4829 5952 2602 1222 11863 2147 3661 15911 460 6579 1809 413 862 3563 7512 2243 3494 6953 3753 5842 4550 5660 4816 4767 5251 6283 4840 5391 5610 5592 5488 5593 5324 5435 ]
C [ 4894 4189 5280 6096 4728 4383 4012 5192 7864 6808 6258 5869 5571 5118 5721 6922 4885 2950 14775 18847 1966 10449 7393 641 124 205 789 211 1599 14245 1969 10578 6639 5216 4459 4330 4274 5487 6358 7222 6270 4789 5544 5210 5028 5089 5060 5037 5316 5311 ]
G [ 5452 6676 6625 4345 4929 5047 5078 4874 3799 4115 4738 4969 4940 4593 5072 3571 6394 8479 2068 629 3288 7480 2365 2605 20319 14034 11855 20132 16790 1225 10063 5483 2304 5928 5393 4652 8189 5411 5648 3925 4171 5382 5634 5533 5557 5085 5231 5634 5699 5521 ]
T [ 5991 5712 4935 5066 4816 6486 7844 6205 5251 5567 5088 5127 5401 6156 5538 7164 5093 3820 1756 503 4084 1125 7782 2044 298 383 6748 445 1950 2168 1657 2897 8764 3104 7596 6377 4188 4643 4379 5287 5509 4747 5183 5067 5006 5435 5422 4937 4862 4934 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.01 -0.01 0.08 -0.04 0.04 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.05 0.00 -0.02 -0.05 -0.01 -0.04 -0.03 0.12 -0.02 0.06 0.03 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.03 0.05 -0.03 -0.03 0.06 0.05 -0.00 0.02 0.16 0.11 0.10 0.15 0.11 -0.02 0.11 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.06 -0.02 -0.05 0.05 -0.02 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 31

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages