Detailed information of deep learning profile BP000134.1

  1. Home
  2. Deep Learning Profile > BP000134.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000134.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR071XWO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3681 3160 2944 4758 6541 4317 3019 3970 3043 3402 4306 4558 4745 4770 4123 2216 3543 5030 1549 307 12685 788 2755 15534 164 6929 840 263 603 2445 7301 1801 2456 6580 3098 5440 3777 4371 4130 3501 4579 6014 3498 4424 4819 5386 4677 4391 4574 4501 ]
C [ 4631 3143 4729 6169 3831 3470 2870 4486 8098 6863 6080 5373 4885 4143 4537 6083 3766 1788 14788 17697 665 11132 7571 487 63 130 709 190 834 13363 1096 8962 6452 4542 3858 3614 3255 5277 6399 7682 6290 3616 5359 4370 4274 4080 4333 4547 4747 4898 ]
G [ 4707 6772 6589 3146 4456 4444 4034 4252 2694 3145 4006 4354 4053 3697 4722 2428 6825 8225 894 64 2841 5812 1322 1344 17819 10945 10204 17443 15321 840 8849 5765 2170 5181 5118 3992 7965 5052 4229 2636 2759 5090 4987 5165 4728 4092 4235 5358 5013 4917 ]
T [ 5122 5066 3879 4068 3313 5910 8218 5433 4306 4731 3749 3856 4458 5531 4759 7414 4007 3098 910 73 1950 409 6493 776 95 137 6388 245 1383 1493 895 1613 7063 1838 6067 5095 3144 3441 3383 4322 4513 3421 4297 4182 4320 4583 4896 3845 3807 3825 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.16 -0.03 0.11 0.06 0.00 -0.00 -0.05 0.01 -0.02 -0.02 0.11 -0.01 0.05 0.04 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.02 -0.01 0.08 0.05 -0.01 0.03 0.16 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.00 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.03 -0.06 0.05 -0.03 -0.03 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 165

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages