Detailed information of deep learning profile BP000133.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in left ventricle myocardium inferior using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000133.1
Cell line/tissue: left ventricle myocardium inferior
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR068HEE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.14 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4333 3772 3728 4968 6575 4702 3683 4360 3601 3898 4639 4810 4715 4861 4208 2985 4326 5123 2042 677 11627 1499 3081 14861 393 6121 1898 748 1236 3927 6553 2422 3414 6119 3526 5251 4231 4745 4383 4339 4870 5524 4200 4891 4978 5082 4984 4902 4790 4844 ]
C [ 4824 3857 5042 6188 4227 4254 3699 4811 7832 6930 5815 5391 5198 4721 5553 6758 4475 2583 14453 18247 1269 10097 7626 615 159 329 1183 565 1930 11565 2248 8708 5906 4653 4322 4127 4037 5147 5926 6534 5729 4451 5181 4702 4647 4750 4764 4832 4950 4965 ]
G [ 4858 6395 6457 3885 4670 4853 4386 4659 3344 3746 4404 4752 4547 4106 4772 3091 6053 8073 1647 254 3039 7098 1784 2334 18585 12522 10861 17303 14326 1688 8812 5486 2858 5713 5215 4570 7362 5344 5059 3735 4045 5222 5357 5298 5175 4798 4825 5232 5280 5078 ]
T [ 5361 5352 4149 4335 3904 5567 7608 5546 4599 4802 4518 4423 4916 5688 4843 6542 4522 3597 1234 198 3441 682 6885 1566 239 404 5434 760 1884 2196 1763 2760 7198 2891 6313 5428 3746 4140 4008 4768 4732 4179 4638 4485 4576 4746 4803 4410 4356 4489 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.09 -0.05 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.12 0.17 -0.03 0.11 0.05 -0.02 -0.02 -0.06 -0.00 -0.04 -0.03 0.11 -0.01 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.17 0.12 0.10 0.15 0.11 -0.02 0.11 0.04 -0.00 0.02 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.07 -0.02 -0.06 0.06 -0.03 -0.04 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 888

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 534

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 60

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages