Detailed information of deep learning profile BP000131.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right atrium auricular region using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000131.1
Cell line/tissue: right atrium auricular region
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR066GBX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4362 4315 4363 5587 5235 4871 4734 4793 3806 5034 4825 3742 3937 3596 5593 6629 2112 7674 1999 1033 1761 1604 350 6794 161 108 748 7409 426 1974 83 962 3435 4393 8263 5277 6259 4954 4297 4161 5285 4699 6191 9547 6575 3629 4479 4114 5789 5706 ]
C [ 5118 5130 5498 4294 4077 4670 5256 5083 5283 2731 2543 4344 5158 8263 4140 5319 5407 2288 6052 9224 916 16081 18350 10957 11490 18968 1422 1192 5986 2878 83 898 8599 7267 2426 4879 3745 4146 4299 4110 3012 2567 4144 3889 4558 4462 2977 7244 7151 4819 ]
G [ 4985 4872 4650 4331 4091 4444 4542 5536 3617 6523 8071 6661 5538 3291 3573 3848 4691 6608 9209 1245 13881 993 320 688 162 81 478 7825 12127 579 18919 15858 1759 3756 6247 4646 4095 4969 5714 6370 7281 8981 4560 2703 3370 3763 6568 4819 2939 4723 ]
T [ 4916 5064 4870 5169 5978 5396 4849 3969 6675 5093 3942 4634 4748 4231 6075 3585 7171 2811 2121 7879 2823 703 361 942 7568 224 16733 2955 842 13950 296 1663 5588 3965 2445 4579 5282 5312 5071 4740 3803 3134 4486 3242 4878 7527 5357 3204 3502 4133 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 0.00 0.03 0.10 -0.02 0.10 0.13 0.08 0.11 0.14 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.05 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.04 -0.01 0.10 -0.02 -0.02 0.01 -0.05 -0.00 -0.00 0.05 0.10 -0.03 0.15 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.05 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.04 -0.03 -0.00 0.02 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages