Detailed information of deep learning profile BP000130.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in bipolar neuron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000130.1
Cell line/tissue: bipolar neuron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR066BZZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.15 0.05 0.08 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.14 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3554 3561 3410 3282 3489 3577 3513 3335 3501 3544 3243 3630 3416 2928 3110 2832 4531 5095 1815 6163 1705 1023 1359 889 158 4456 236 236 1341 4926 837 3319 385 1242 2777 3507 4742 3731 4071 3612 3576 3476 3660 3736 4045 5128 4249 3272 3406 3295 ]
C [ 3996 3974 3847 4182 3931 3708 3739 4120 3910 4089 3791 3199 3148 4378 3907 5881 3134 3873 4530 1615 4307 7312 591 13245 14370 7925 9414 14190 1910 1791 5744 2458 573 1538 5902 4386 2762 3508 3180 3770 3516 3460 3184 2866 3389 3658 3579 3462 3223 4694 ]
G [ 3651 3528 3656 3674 3506 3705 3668 3508 3553 3794 3533 4244 4884 4128 3795 3079 3032 3251 3343 4684 7142 944 10373 414 48 476 96 59 390 5461 6392 1417 12473 9724 2167 3322 4721 3957 3860 3941 4018 4257 4793 5221 3723 2929 3241 3419 4240 3784 ]
T [ 3587 3725 3875 3650 3862 3798 3868 3825 3824 3361 4221 3715 3340 3354 3976 2996 4091 2569 5100 2326 1634 5509 2465 240 212 1931 5042 303 11147 2610 1815 7594 1357 2284 3942 3573 2563 3592 3677 3465 3678 3595 3151 2965 3631 3073 3719 4635 3919 3015 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.05 -0.02 0.00 -0.05 0.02 -0.06 -0.03 -0.02 0.05 -0.05 -0.01 -0.07 -0.03 -0.01 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.12 -0.02 0.12 0.16 0.10 0.13 0.17 0.03 -0.01 0.05 0.06 -0.02 -0.03 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.04 -0.01 -0.07 -0.03 -0.00 0.05 0.10 -0.01 0.16 0.10 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.05 0.04 -0.05 0.08 -0.01 -0.01 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6927

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 297

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages