Detailed information of deep learning profile BP000129.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000129.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR062JAC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.19 0.06 0.07 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4668 4720 4493 4436 4542 5367 5166 4823 4775 4792 4113 5082 5017 3961 4266 3658 6032 7105 2323 8281 2213 1149 1691 1657 274 6581 241 187 1502 7559 757 2804 239 1519 3659 4676 7159 5163 5880 4991 4629 4669 5207 4957 5785 7954 6214 4315 4709 4615 ]
C [ 5268 5048 5244 5225 5317 4563 4503 5189 5366 5357 5331 3413 3138 4945 5361 8227 4312 5092 5843 2242 5829 9641 831 16726 19111 10957 11771 19190 2040 1833 6993 3259 271 1605 8471 6393 3306 5112 4162 4600 4876 4477 3782 3453 4577 4491 4804 4690 3854 6335 ]
G [ 5113 5001 5031 5036 4845 4721 4526 4544 4661 5480 4154 6211 7381 6439 5266 3573 3798 4159 4762 6442 9908 1149 14295 929 124 993 225 110 691 7084 10655 1170 18655 14649 2464 4323 6414 5004 4593 5164 5481 5941 6713 7605 4974 3507 3986 4151 6050 5002 ]
T [ 4796 5076 5077 5148 5141 5194 5650 5289 5043 4216 6247 5139 4309 4500 4952 4387 5703 3489 6917 2880 1895 7906 3028 533 336 1314 7608 358 15612 3369 1440 12612 680 2072 5251 4453 2966 4566 5210 5090 4859 4758 4143 3830 4509 3893 4841 6689 5232 3893 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.01 0.03 -0.05 0.04 -0.01 -0.07 -0.02 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.02 0.05 0.01 0.03 0.04 0.00 0.06 0.16 -0.02 0.16 0.20 0.12 0.15 0.20 0.03 -0.01 0.06 0.10 -0.02 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.02 0.01 0.01 0.02 0.04 0.06 0.08 -0.01 0.15 -0.03 -0.03 0.01 -0.05 -0.01 0.01 0.07 0.14 -0.02 0.20 0.13 -0.01 0.04 0.06 0.03 0.02 0.02 0.03 ]
T [ 0.00 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.02 -0.02 -0.06 -0.05 -0.07 0.06 -0.04 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2057

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 649

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 565

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 212

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 34

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages