Detailed information of deep learning profile BP000128.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000128.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR059KXR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4478 4066 3967 5325 6489 4944 3972 4610 3879 4267 4868 4896 5124 5084 4436 2934 4420 5335 2160 616 12399 1653 3346 15526 341 7011 1539 364 748 3482 7223 2027 3126 6635 3556 5579 4330 5051 4472 4588 5155 5945 4361 4974 5184 5446 5187 5207 5095 5108 ]
C [ 4688 3895 5156 5831 4407 4152 3657 4962 7607 6669 5935 5485 5113 4883 5318 6639 4562 2509 14656 18799 1346 10249 7161 598 76 196 865 124 1260 13490 1514 9919 6275 4674 4271 3899 3881 5171 6173 6850 6000 4355 5354 4761 4667 4717 4794 4823 5078 5053 ]
G [ 5006 6585 6199 4075 4728 4706 4545 4719 3532 3862 4589 4813 4645 4248 4943 3324 6294 8377 1597 309 2941 7242 1872 2208 19325 12444 11456 19148 16259 1066 9843 5459 2413 5877 5087 4527 7869 5402 5156 3452 3720 5263 5345 5498 5323 4674 4700 5375 5322 5215 ]
T [ 5768 5394 4618 4709 4316 6138 7766 5649 4922 5142 4548 4746 5058 5725 5243 7043 4664 3719 1527 216 3254 796 7561 1608 198 289 6080 304 1673 1902 1360 2535 8126 2754 7026 5935 3860 4316 4139 5050 5065 4377 4880 4707 4766 5103 5259 4535 4445 4564 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.01 0.12 0.19 -0.01 0.12 0.06 0.01 -0.01 -0.05 0.01 -0.04 -0.03 0.13 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.03 -0.02 0.08 0.06 -0.01 0.03 0.18 0.13 0.11 0.18 0.13 -0.02 0.13 0.05 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.03 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1252

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 819

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 621

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 604

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 603

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 544

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 138

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages