Detailed information of deep learning profile BP000127.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000127.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR059BCO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.03 0.00 0.07 0.12 0.05 0.07 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ 0.00 0.00 0.01 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4165 4075 4143 4489 4642 4311 4412 4384 4044 4346 4421 3741 3891 3763 5035 5486 2981 6184 2805 1915 2294 1913 1101 4606 463 128 1094 6682 576 3023 177 911 3199 4079 6405 4713 5514 4838 4067 3808 4449 4019 5293 8040 5442 3255 3987 3686 5037 5058 ]
C [ 4236 4274 4331 3898 3743 4217 4330 4336 4250 3520 3274 4324 4404 5949 3903 4441 4768 2722 4425 6930 1835 11705 14565 9841 11763 16643 1635 1167 5700 1814 219 924 6692 5310 2320 3781 3257 3568 3839 3509 2600 2293 3462 3351 3833 3640 2861 6039 5930 4056 ]
G [ 4169 4090 4089 4046 4045 3987 3873 4276 3687 4483 5179 4762 4277 3363 3318 3411 3716 4819 6977 2385 9296 1746 652 806 141 67 336 6645 9362 1017 16015 13622 1909 4014 5826 4832 3976 4270 4569 5401 6148 7827 3977 2583 3197 3419 5448 4150 2657 3840 ]
T [ 4456 4587 4463 4593 4596 4511 4411 4030 5045 4677 4152 4199 4454 3951 4770 3688 5561 3301 2819 5796 3601 1662 708 1773 4659 188 13961 2532 1388 11172 615 1569 5226 3623 2475 3700 4279 4350 4551 4308 3829 2887 4294 3052 4554 6712 4730 3151 3402 4072 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.02 -0.00 -0.04 -0.02 -0.00 -0.04 0.01 -0.05 -0.04 -0.04 0.05 -0.06 -0.02 -0.08 -0.04 -0.01 -0.01 0.03 0.01 0.01 0.01 0.00 -0.00 0.00 0.00 0.01 0.04 0.01 -0.01 ]
C [ 0.01 0.01 -0.00 0.02 0.07 -0.01 0.09 0.13 0.08 0.11 0.16 0.01 -0.03 0.04 0.06 -0.02 -0.03 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 0.00 -0.01 -0.03 -0.01 -0.01 0.00 0.01 ]
G [ 0.01 0.01 0.02 0.03 -0.00 0.08 -0.02 -0.03 -0.01 -0.07 -0.03 -0.03 0.04 0.10 -0.03 0.16 0.11 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 0.03 0.03 0.05 -0.00 -0.03 -0.01 -0.00 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.00 -0.04 -0.05 -0.05 0.02 -0.06 0.08 -0.02 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.02 -0.00 0.01 0.01 0.00 0.00 -0.01 -0.01 0.01 -0.01 0.01 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 491

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 130

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages