Detailed information of deep learning profile BP000126.1

  1. Home
  2. Deep Learning Profile > BP000126.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000126.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR048RGR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 0.00 0.08 0.14 0.06 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.11 -0.00 0.01 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4137 3853 4048 4295 4260 4025 4182 4212 4036 4087 4020 3736 3841 3625 4548 4995 3142 5668 2986 1927 2263 1875 974 3947 448 250 1200 6299 669 3251 273 983 3078 3778 5940 4333 5140 4499 3779 3733 4127 3821 4734 6958 5289 3302 3768 3670 4499 4959 ]
C [ 4032 4178 4171 3999 3873 4203 4167 4149 4040 3751 3467 4341 4212 5432 3870 4328 4611 2806 4281 6611 1834 10809 14010 9519 11813 15727 1928 1320 5702 1766 286 1082 6211 4970 2415 3717 3224 3599 3840 3456 2670 2416 3633 3388 3634 3663 2988 5213 5686 3944 ]
G [ 4028 4048 3970 3928 4043 3910 3870 3951 3766 4289 4736 4392 3996 3548 3488 3454 3620 4498 6440 2639 8575 2070 713 882 146 145 385 6302 8489 1231 14965 12725 2100 4055 5580 4715 3749 4283 4340 5043 5835 7206 4002 2792 3292 3541 4875 4302 2818 3663 ]
T [ 4194 4312 4202 4169 4215 4253 4172 4079 4549 4264 4168 3922 4342 3786 4485 3614 5018 3419 2684 5214 3719 1637 694 2043 3984 269 12878 2470 1531 10143 867 1601 5002 3588 2456 3626 4278 4010 4432 4159 3759 2948 4022 3253 4176 5885 4760 3206 3388 3825 ]

Hypothetical CWM

   
A [ 0.02 -0.02 0.02 -0.01 -0.04 -0.02 -0.01 -0.04 0.01 -0.06 -0.05 -0.03 0.07 -0.07 -0.02 -0.09 -0.05 -0.02 -0.01 0.03 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.02 -0.01 0.02 0.09 -0.01 0.11 0.16 0.10 0.13 0.19 0.02 -0.04 0.05 0.06 -0.04 -0.05 0.05 0.04 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.02 0.03 0.05 -0.01 0.09 -0.03 -0.04 -0.01 -0.08 -0.04 -0.03 0.05 0.12 -0.04 0.19 0.14 -0.02 0.04 0.05 0.02 0.00 0.01 0.02 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.05 -0.06 -0.05 0.03 -0.06 0.10 -0.02 -0.02 0.05 -0.03 -0.01 0.03 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1803

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 157

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages