Detailed information of deep learning profile BP000125.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in mucosa of descending colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000125.1
Cell line/tissue: mucosa of descending colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR038VWU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3946 3875 3920 5028 4638 4395 4305 4355 3517 4509 4357 3361 3522 3200 5261 6339 1846 7582 1577 760 1421 1340 173 6344 168 124 877 6793 486 2112 128 1119 3110 4173 7246 4715 5556 4527 4009 3849 4832 4461 5576 8260 5991 3402 4082 3875 5098 5211 ]
C [ 5010 5118 5440 4435 4311 4974 5268 5118 5216 2867 2684 4658 5077 8258 4145 5195 5509 2005 5640 9715 684 15942 17930 10466 11162 18067 1331 1524 6189 2973 182 1208 8460 6823 2720 4887 3905 4235 4494 4187 3343 2924 4338 4303 4532 4573 3324 6637 6871 4853 ]
G [ 4950 4867 4594 4348 4240 4353 4486 5398 3766 6394 7762 6337 5249 3331 3611 3889 4594 6449 9653 820 13956 775 131 731 151 91 558 7432 10783 866 17754 14508 1911 3826 6112 4751 4279 4960 5528 6088 6860 8046 4621 2904 3545 4050 6290 5015 3314 4682 ]
T [ 4590 4636 4542 4685 5307 4774 4437 3625 5997 4726 3693 4140 4648 3707 5479 3073 6547 2460 1626 7201 2435 439 262 955 7015 214 15730 2747 1038 12545 432 1661 5015 3674 2418 4143 4756 4774 4465 4372 3461 3065 3961 3029 4428 6471 4800 2969 3213 3750 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.00 0.02 -0.04 0.02 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.01 0.00 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.11 -0.02 0.10 0.14 0.08 0.10 0.14 0.01 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.03 0.10 -0.03 -0.04 0.00 -0.06 -0.02 -0.01 0.04 0.09 -0.04 0.15 0.10 -0.01 0.03 0.05 0.02 0.01 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.04 -0.04 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 379

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 327

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages