Detailed information of deep learning profile BP000124.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000124.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR038FOS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.06 0.09 0.03 0.04 0.08 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 -0.00 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.04 -0.00 0.11 0.05 -0.00 0.00 0.01 -0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 1641 1637 1643 2257 2050 1896 1794 1827 1431 1915 1783 1404 1378 1303 2123 2652 698 3176 654 281 607 584 88 2891 66 41 317 2538 176 742 27 388 1265 1655 3574 2165 2581 1908 1574 1564 2040 1831 2564 4052 2639 1340 1713 1510 2419 2262 ]
C [ 2386 2480 2689 2026 1875 2198 2421 2456 2517 1243 1142 1849 2470 3974 1945 2616 2618 1039 2635 4577 261 7158 8121 4784 5267 8187 544 682 2596 1495 40 443 4159 3599 1081 2392 1736 1938 1957 1867 1387 1205 2077 1914 2144 2221 1367 3520 3322 2229 ]
G [ 2430 2303 2261 2111 1950 2236 2173 2681 1617 3242 3974 3269 2646 1473 1761 1864 2165 3127 4371 335 6591 358 56 381 96 66 306 4055 5332 304 8259 6894 836 1721 2851 2035 1914 2473 2803 3038 3584 4239 2086 1218 1656 1803 3213 2296 1442 2382 ]
T [ 1935 1972 1799 1998 2517 2062 2004 1428 2827 1992 1493 1870 1898 1642 2563 1260 2911 1050 732 3199 933 292 127 336 2963 98 7225 1117 288 5851 66 667 2132 1417 886 1800 2161 2073 2058 1923 1381 1117 1665 1208 1953 3028 2099 1066 1209 1519 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.03 0.02 -0.01 -0.04 -0.01 -0.01 -0.03 0.01 -0.06 -0.04 -0.05 0.03 -0.04 -0.03 -0.05 -0.02 -0.01 0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.00 0.02 0.00 0.01 0.01 -0.01 0.02 0.07 -0.03 0.07 0.09 0.05 0.07 0.08 0.01 -0.02 0.02 0.05 -0.03 -0.02 0.03 0.02 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.00 0.01 0.01 0.03 -0.03 0.07 -0.03 -0.03 0.00 -0.03 -0.01 -0.01 0.02 0.06 -0.03 0.11 0.07 -0.02 0.01 0.03 0.01 0.00 0.01 0.02 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.02 -0.03 -0.05 0.03 -0.04 0.06 -0.02 -0.03 0.03 -0.03 -0.01 0.01 -0.02 -0.02 0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages