Detailed information of deep learning profile BP000123.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000123.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR037GKL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4315 4157 4340 5115 4890 4626 4538 4754 3895 4767 4762 3790 4008 3501 5488 6547 2206 7732 2055 1092 1812 1539 258 6423 186 94 979 7214 548 2365 158 1205 3391 4434 7276 5068 5806 4892 4418 4261 4991 4670 5729 8166 6080 3706 4386 4179 5273 5420 ]
C [ 4825 4877 5041 4201 4147 4631 5001 4844 4798 3002 2783 4556 4812 7571 4032 4760 5285 2078 5371 8641 959 15290 17726 10307 11006 18073 1480 1344 6374 2636 165 1178 7956 6135 2711 4527 3595 4052 4231 4003 3166 2790 4112 3920 4294 4400 3234 6115 6327 4541 ]
G [ 4570 4541 4307 4195 4054 4175 4244 4953 3763 5825 7015 5883 4913 3326 3426 3714 4388 5900 9027 1287 12706 1034 178 657 139 66 461 7049 10399 891 17648 14344 1908 3824 5861 4617 4147 4700 5163 5660 6407 7531 4390 2915 3451 3725 5666 4712 3152 4323 ]
T [ 4758 4893 4780 4957 5377 5036 4685 3917 6012 4874 3908 4239 4735 4070 5522 3447 6589 2758 2015 7448 2991 605 306 1081 7137 235 15548 2861 1147 12576 497 1741 5213 4075 2620 4256 4920 4824 4656 4544 3904 3477 4237 3467 4643 6637 5182 3462 3716 4184 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.02 0.04 0.07 -0.01 -0.02 0.05 0.04 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.03 -0.03 0.01 -0.06 -0.01 -0.00 0.04 0.10 -0.03 0.15 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.01 0.02 -0.01 -0.03 -0.04 -0.06 0.04 -0.04 0.08 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1016

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 115

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages