Detailed information of deep learning profile BP000120.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000120.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR033KMZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.17 0.06 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4865 4615 4856 5392 5150 5008 4927 5114 4434 5320 5140 4258 4435 3939 6096 7040 2824 8402 2691 1492 2067 1844 517 6241 365 232 1608 7596 774 3538 220 1486 3907 4970 7225 5469 6003 5293 4991 4863 5274 5118 6135 8464 6306 4331 4718 4661 5926 5911 ]
C [ 5689 5839 5806 5335 5281 5714 5952 5864 5679 4242 4021 5545 5921 8496 5029 5675 6409 2930 5943 10247 1483 16509 19672 11867 13404 20416 2476 2114 7641 3664 325 1881 9036 6726 3605 5334 4538 5035 5137 4830 4073 3684 5121 4816 5241 5154 4215 7160 7095 5376 ]
G [ 5408 5499 5310 5153 5136 5098 5151 5771 4975 6390 7538 6779 5685 4294 4425 4727 5221 6555 10299 1979 14038 1912 431 1308 447 191 912 8155 11198 1459 20038 15754 2714 4864 7229 5755 5379 5728 5952 6593 7544 8506 5271 3908 4580 4611 6717 5466 4072 5325 ]
T [ 5263 5272 5253 5345 5658 5405 5195 4476 6137 5273 4526 4643 5184 4496 5675 3783 6771 3338 2292 7507 3637 960 605 1809 7009 386 16229 3360 1612 12564 642 2104 5568 4665 3166 4667 5305 5169 5145 4939 4334 3917 4698 4037 5098 7129 5575 3938 4132 4613 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.07 -0.03 0.01 -0.04 0.02 -0.06 -0.05 -0.04 0.06 -0.06 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.13 -0.02 0.13 0.17 0.10 0.13 0.19 0.03 -0.02 0.06 0.08 -0.02 -0.03 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.03 0.00 -0.07 -0.02 0.00 0.06 0.12 -0.02 0.19 0.13 -0.01 0.04 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.07 0.04 -0.05 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 166

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages