Detailed information of deep learning profile BP000119.1

  1. Home
  2. Deep Learning Profile > BP000119.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000119.1
Cell line/tissue: endothelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR031PXV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.09 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.15 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3681 3549 3702 4240 4075 3770 3796 3975 3370 3905 4023 3294 3452 3074 4539 5424 2444 6219 2089 1361 1664 1366 138 4501 231 97 1010 5932 515 2610 179 985 2927 3688 5709 4226 4821 4192 3696 3522 4087 3734 4709 6607 4954 3207 3775 3579 4432 4478 ]
C [ 4088 4190 4160 3605 3658 4161 4265 4113 4023 3145 2871 4192 4169 5986 3643 4120 4499 2051 4266 7073 1066 12372 15288 9482 10245 15418 1449 1207 5541 1926 192 1061 6583 5134 2443 3780 3248 3493 3703 3537 2731 2520 3500 3518 3706 3609 2806 5259 5395 3956 ]
G [ 3959 4026 3729 3770 3701 3641 3726 4121 3442 4529 5225 4642 4008 3123 3109 3150 3640 4769 7334 1641 10068 1191 86 508 90 44 343 6064 8393 1047 14859 12113 1767 3532 5175 4187 3647 4003 4328 4755 5588 6521 3870 2657 3089 3333 4925 3894 2782 3687 ]
T [ 3973 3936 4110 4086 4267 4129 3914 3492 4866 4122 3582 3573 4072 3518 4410 3007 5118 2662 2012 5626 2903 772 189 1210 5135 142 12899 2498 1252 10118 471 1542 4424 3347 2374 3508 3985 4013 3974 3887 3295 2926 3622 2919 3952 5552 4195 2969 3092 3580 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.03 0.00 -0.04 0.01 -0.06 -0.04 -0.04 0.05 -0.06 -0.03 -0.07 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ -0.00 0.01 0.02 -0.01 0.03 0.09 -0.02 0.10 0.15 0.09 0.12 0.16 0.01 -0.03 0.04 0.06 -0.03 -0.03 0.04 0.04 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.02 0.02 0.04 -0.02 0.09 -0.03 -0.04 -0.01 -0.07 -0.02 -0.01 0.05 0.10 -0.02 0.16 0.11 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.05 -0.05 -0.06 0.03 -0.06 0.09 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 459

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 194

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages