Detailed information of deep learning profile BP000119.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000119.1
Cell line/tissue: endothelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR031PXV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.15 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.09 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3580 3092 2969 4195 5552 3952 2919 3622 2926 3295 3887 3974 4013 3985 3508 2374 3347 4424 1542 471 10118 1252 2498 12899 142 5135 1210 189 772 2903 5626 2012 2662 5118 3007 4410 3518 4072 3573 3582 4122 4866 3492 3914 4129 4267 4086 4110 3936 3973 ]
C [ 3687 2782 3894 4925 3333 3089 2657 3870 6521 5588 4755 4328 4003 3647 4187 5175 3532 1767 12113 14859 1047 8393 6064 343 44 90 508 86 1191 10068 1641 7334 4769 3640 3150 3109 3123 4008 4642 5225 4529 3442 4121 3726 3641 3701 3770 3729 4026 3959 ]
G [ 3956 5395 5259 2806 3609 3706 3518 3500 2520 2731 3537 3703 3493 3248 3780 2443 5134 6583 1061 192 1926 5541 1207 1449 15418 10245 9482 15288 12372 1066 7073 4266 2051 4499 4120 3643 5986 4169 4192 2871 3145 4023 4113 4265 4161 3658 3605 4160 4190 4088 ]
T [ 4478 4432 3579 3775 3207 4954 6607 4709 3734 4087 3522 3696 4192 4821 4226 5709 3688 2927 985 179 2610 515 5932 1010 97 231 4501 138 1366 1664 1361 2089 6219 2444 5424 4539 3074 3452 3294 4023 3905 3370 3975 3796 3770 4075 4240 3702 3549 3681 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.09 -0.06 0.03 -0.06 -0.05 -0.05 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.11 0.16 -0.02 0.10 0.05 -0.01 -0.02 -0.07 -0.01 -0.04 -0.03 0.09 -0.02 0.04 0.02 0.02 0.01 0.00 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.04 0.04 -0.03 -0.03 0.06 0.04 -0.03 0.01 0.16 0.12 0.09 0.15 0.10 -0.02 0.09 0.03 -0.01 0.02 0.01 -0.00 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.07 -0.03 -0.06 0.05 -0.04 -0.04 -0.06 0.01 -0.04 0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3305

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 459

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 194

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages