Detailed information of deep learning profile BP000118.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000118.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR028YEV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.14 0.10 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4195 3670 3534 5151 6580 4601 3578 4253 3439 3895 4500 4706 4880 4843 4209 2686 4164 5233 1794 494 12361 1245 3091 15339 233 7011 1208 393 690 3050 7397 2104 2820 6620 3522 5453 4216 4802 4337 4088 4877 5903 3968 4644 4945 5265 4963 4772 4864 4824 ]
C [ 4286 3276 4782 5798 3873 3653 3070 4539 7605 6493 5720 5207 4760 4218 4824 6173 3930 2160 14550 17889 995 10463 7062 481 87 154 753 272 1249 12624 1396 8765 5996 4450 3713 3614 3343 4941 5954 6847 5729 3888 5095 4354 4324 4249 4300 4411 4615 4697 ]
G [ 4668 6517 6180 3459 4448 4488 4052 4206 3005 3336 4203 4308 4152 3775 4578 2783 6087 7941 1194 169 2853 6369 1439 1709 18250 11293 10522 17689 15191 1162 8761 5729 2336 5328 5018 4193 7570 5023 4679 3010 3258 5002 4944 5041 4788 4245 4346 5183 5002 4895 ]
T [ 5547 5233 4200 4288 3795 5954 7996 5698 4647 4972 4273 4475 4904 5860 5085 7054 4515 3362 1158 144 2487 619 7104 1167 126 238 6213 342 1566 1860 1142 2098 7544 2298 6443 5436 3567 3930 3726 4751 4832 3903 4689 4657 4639 4937 5087 4330 4215 4280 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.01 0.02 0.00 -0.02 0.04 -0.01 -0.01 0.09 -0.04 0.05 -0.05 -0.04 -0.04 -0.01 0.03 -0.01 -0.01 0.03 -0.01 0.01 0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.10 0.05 -0.01 -0.01 -0.06 0.00 -0.02 -0.03 0.11 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.03 0.06 -0.02 -0.02 0.08 0.04 -0.02 0.02 0.16 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.01 0.02 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.06 -0.03 -0.04 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1923

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 790

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 445

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 108

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages