Detailed information of deep learning profile BP000118.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000118.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR028YEV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.10 0.14 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4280 4215 4330 5087 4937 4639 4657 4689 3903 4832 4751 3726 3930 3567 5436 6443 2298 7544 2098 1142 1860 1566 342 6213 238 126 1167 7104 619 2487 144 1158 3362 4515 7054 5085 5860 4904 4475 4273 4972 4647 5698 7996 5954 3795 4288 4200 5233 5547 ]
C [ 4895 5002 5183 4346 4245 4788 5041 4944 5002 3258 3010 4679 5023 7570 4193 5018 5328 2336 5729 8761 1162 15191 17689 10522 11293 18250 1709 1439 6369 2853 169 1194 7941 6087 2783 4578 3775 4152 4308 4203 3336 3005 4206 4052 4488 4448 3459 6180 6517 4668 ]
G [ 4697 4615 4411 4300 4249 4324 4354 5095 3888 5729 6847 5954 4941 3343 3614 3713 4450 5996 8765 1396 12624 1249 272 753 154 87 481 7062 10463 995 17889 14550 2160 3930 6173 4824 4218 4760 5207 5720 6493 7605 4539 3070 3653 3873 5798 4782 3276 4286 ]
T [ 4824 4864 4772 4963 5265 4945 4644 3968 5903 4877 4088 4337 4802 4216 5453 3522 6620 2820 2104 7397 3050 690 393 1208 7011 233 15339 3091 1245 12361 494 1794 5233 4164 2686 4209 4843 4880 4706 4500 3895 3439 4253 3578 4601 6580 5151 3534 3670 4195 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.04 -0.03 0.06 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.02 0.01 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.02 -0.02 0.04 0.08 -0.02 -0.02 0.06 0.03 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.11 -0.03 -0.02 0.00 -0.06 -0.01 -0.01 0.05 0.10 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 0.00 0.01 -0.01 0.03 -0.01 -0.01 0.03 -0.01 -0.04 -0.04 -0.05 0.05 -0.04 0.09 -0.01 -0.01 0.04 -0.02 0.00 0.02 -0.01 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1923

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 790

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 445

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 108

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages