Detailed information of deep learning profile BP000117.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in OCI-LY7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000117.1
Cell line/tissue: OCI-LY7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR027HML
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.14 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5338 5136 5441 5676 5592 5331 5403 5485 5048 5924 5441 4675 5089 4453 6793 7870 3300 8950 3136 1786 2398 2068 525 6831 478 312 2352 8433 1291 4567 609 1823 4231 5429 7408 5714 6484 5532 5510 5458 5689 5631 6429 8082 6465 5013 5381 5055 6022 6177 ]
C [ 6003 6161 5812 5522 5473 5931 5709 5849 5704 4536 4324 6075 5779 8531 4936 5594 6445 2595 5586 10788 1415 17614 21190 12808 15002 21472 3036 2649 7801 3284 1017 2221 8891 6561 4036 5456 4827 5451 5318 4994 4504 4215 5010 5395 5400 5234 4810 7010 6898 5986 ]
G [ 5431 5520 5408 5569 5678 5220 5475 5951 5374 6397 7444 6475 5880 4656 4667 4938 5314 7189 11253 2265 14654 1788 248 798 210 140 684 7616 10894 2411 19253 15411 3182 5355 7305 6019 5544 5915 6173 6513 7408 8063 5531 4412 4868 5121 6462 5653 4475 5030 ]
T [ 5665 5620 5776 5670 5694 5955 5850 5152 6311 5580 5228 5212 5689 4797 6041 4035 7378 3703 2462 7598 3970 967 474 2000 6747 513 16365 3739 2451 12175 1558 2982 6133 5092 3688 5248 5582 5539 5436 5472 4836 4528 5467 4548 5704 7069 5784 4719 5042 5244 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.02 0.06 -0.04 -0.01 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.01 0.04 0.12 -0.01 0.12 0.15 0.10 0.12 0.15 0.03 -0.00 0.05 0.06 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.01 0.12 -0.02 -0.03 -0.00 -0.05 -0.03 -0.00 0.05 0.10 -0.01 0.15 0.10 -0.01 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.03 -0.04 0.08 -0.01 -0.01 0.03 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages