Detailed information of deep learning profile BP000117.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in OCI-LY7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000117.1
Cell line/tissue: OCI-LY7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR027HML
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.14 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5244 5042 4719 5784 7069 5704 4548 5467 4528 4836 5472 5436 5539 5582 5248 3688 5092 6133 2982 1558 12175 2451 3739 16365 513 6747 2000 474 967 3970 7598 2462 3703 7378 4035 6041 4797 5689 5212 5228 5580 6311 5152 5850 5955 5694 5670 5776 5620 5665 ]
C [ 5030 4475 5653 6462 5121 4868 4412 5531 8063 7408 6513 6173 5915 5544 6019 7305 5355 3182 15411 19253 2411 10894 7616 684 140 210 798 248 1788 14654 2265 11253 7189 5314 4938 4667 4656 5880 6475 7444 6397 5374 5951 5475 5220 5678 5569 5408 5520 5431 ]
G [ 5986 6898 7010 4810 5234 5400 5395 5010 4215 4504 4994 5318 5451 4827 5456 4036 6561 8891 2221 1017 3284 7801 2649 3036 21472 15002 12808 21190 17614 1415 10788 5586 2595 6445 5594 4936 8531 5779 6075 4324 4536 5704 5849 5709 5931 5473 5522 5812 6161 6003 ]
T [ 6177 6022 5055 5381 5013 6465 8082 6429 5631 5689 5458 5510 5532 6484 5714 7408 5429 4231 1823 609 4567 1291 8433 2352 312 478 6831 525 2068 2398 1786 3136 8950 3300 7870 6793 4453 5089 4675 5441 5924 5048 5485 5403 5331 5592 5676 5441 5136 5338 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.01 -0.01 0.08 -0.04 0.03 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.01 0.10 0.05 -0.00 -0.03 -0.05 -0.00 -0.03 -0.02 0.12 -0.01 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.00 0.03 0.05 -0.02 -0.02 0.06 0.05 -0.00 0.03 0.15 0.12 0.10 0.15 0.12 -0.01 0.12 0.04 -0.01 0.03 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.01 -0.04 0.06 -0.02 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages