Detailed information of deep learning profile BP000116.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000116.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR027FSZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.12 0.07 -0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4614 3924 3781 5620 7289 5102 3748 4825 3630 4172 4810 5171 5142 5147 4463 2967 4534 5707 1786 396 13201 1224 3177 16090 311 6865 1699 755 1233 3629 7457 2680 3430 6789 3981 5819 4518 5084 4725 4485 5291 6138 4479 5082 5375 5514 5374 5178 5199 5144 ]
C [ 4870 3606 5265 6547 4316 4091 3519 4918 8761 7290 6336 5611 5330 4878 5577 6945 4504 2360 16121 19733 1064 11543 8011 767 161 456 1408 742 2097 12804 2325 9150 6224 4868 4378 4091 3996 5422 6392 7142 5972 4529 5496 4934 4787 4869 4800 4980 5205 5160 ]
G [ 5047 7036 6986 3690 4836 4862 4241 4576 3201 3664 4492 4749 4553 4138 4933 2997 6657 8662 1368 190 3122 7057 1718 2226 19817 12746 11166 18265 15164 1722 8967 5946 3004 5926 5447 4822 7981 5602 5142 3718 3991 5334 5427 5491 5283 4855 4883 5574 5516 5377 ]
T [ 5927 5892 4426 4601 4017 6403 8950 6139 4866 5332 4820 4927 5433 6295 5485 7549 4763 3729 1183 139 3071 634 7552 1375 169 391 6185 696 1964 2303 1709 2682 7800 2875 6652 5726 3963 4350 4199 5113 5204 4457 5056 4951 5013 5220 5401 4726 4538 4777 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.07 -0.05 0.03 -0.05 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.02 0.11 0.16 -0.03 0.10 0.04 -0.00 -0.01 -0.06 0.00 -0.02 -0.02 0.09 -0.01 0.04 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.00 0.04 0.04 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.15 0.11 0.08 0.13 0.09 -0.02 0.09 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.07 -0.03 -0.06 0.05 -0.03 -0.04 -0.05 0.01 -0.04 0.01 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 229

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages