Detailed information of deep learning profile BP000116.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000116.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR027FSZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 -0.00 0.07 0.12 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.06 0.00 0.00 0.00 0.00 0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4777 4538 4726 5401 5220 5013 4951 5056 4457 5204 5113 4199 4350 3963 5726 6652 2875 7800 2682 1709 2303 1964 696 6185 391 169 1375 7552 634 3071 139 1183 3729 4763 7549 5485 6295 5433 4927 4820 5332 4866 6139 8950 6403 4017 4601 4426 5892 5927 ]
C [ 5377 5516 5574 4883 4855 5283 5491 5427 5334 3991 3718 5142 5602 7981 4822 5447 5926 3004 5946 8967 1722 15164 18265 11166 12746 19817 2226 1718 7057 3122 190 1368 8662 6657 2997 4933 4138 4553 4749 4492 3664 3201 4576 4241 4862 4836 3690 6986 7036 5047 ]
G [ 5160 5205 4980 4800 4869 4787 4934 5496 4529 5972 7142 6392 5422 3996 4091 4378 4868 6224 9150 2325 12804 2097 742 1408 456 161 767 8011 11543 1064 19733 16121 2360 4504 6945 5577 4878 5330 5611 6336 7290 8761 4918 3519 4091 4316 6547 5265 3606 4870 ]
T [ 5144 5199 5178 5374 5514 5375 5082 4479 6138 5291 4485 4725 5084 4518 5819 3981 6789 3430 2680 7457 3629 1233 755 1699 6865 311 16090 3177 1224 13201 396 1786 5707 4534 2967 4463 5147 5142 5171 4810 4172 3630 4825 3748 5102 7289 5620 3781 3924 4614 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.01 -0.04 0.01 -0.05 -0.04 -0.03 0.05 -0.06 -0.03 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.09 -0.02 0.09 0.13 0.08 0.11 0.15 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.04 0.04 -0.00 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.04 -0.01 0.09 -0.02 -0.02 0.00 -0.06 -0.01 -0.00 0.04 0.10 -0.03 0.16 0.11 -0.02 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.05 0.03 -0.05 0.07 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 229

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages