Detailed information of deep learning profile BP000115.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000115.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR014GSQ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.04 0.12 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4834 4236 3962 6005 7901 5519 4028 4987 3979 4500 5346 5602 5801 5835 4967 2960 4727 6023 1984 571 14726 1243 3455 17912 278 8501 1287 455 784 3481 8843 2424 3242 7843 4017 6416 4865 5447 5115 4606 5761 7073 4673 5467 5870 6294 5880 5685 5680 5687 ]
C [ 5064 3644 5300 6716 4290 3990 3317 5177 8928 7602 6557 5895 5475 4789 5360 6938 4401 2180 16945 20661 909 12472 8040 537 105 208 906 344 1402 14686 1692 10176 6880 5022 4308 3985 3838 5819 6838 8075 6695 4306 5778 4962 4757 4666 4845 4982 5347 5280 ]
G [ 5250 7326 7384 3705 4887 4951 4473 4676 3199 3554 4636 4868 4672 4237 5237 3121 7170 9355 1249 148 3148 7210 1478 1955 20995 12589 11889 20307 17471 1259 9652 6498 2540 6109 5632 4681 8849 5609 5167 3307 3396 5617 5636 5713 5360 4733 4751 5798 5615 5586 ]
T [ 6382 6324 4884 5104 4452 7070 9712 6690 5424 5874 4991 5165 5582 6669 5966 8511 5232 3972 1352 150 2747 605 8557 1126 152 232 7448 424 1873 2104 1343 2432 8868 2556 7573 6448 3978 4655 4410 5542 5678 4534 5443 5388 5543 5837 6054 5065 4888 4977 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.04 -0.04 -0.03 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.02 -0.01 0.09 0.13 -0.02 0.09 0.04 -0.01 -0.01 -0.05 -0.00 -0.03 -0.02 0.09 -0.02 0.04 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.13 0.09 0.07 0.12 0.09 -0.02 0.09 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 -0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.04 -0.03 -0.03 -0.05 0.01 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages