Detailed information of deep learning profile BP000115.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000115.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR014GSQ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.12 0.04 0.05 0.13 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4977 4888 5065 6054 5837 5543 5388 5443 4534 5678 5542 4410 4655 3978 6448 7573 2556 8868 2432 1343 2104 1873 424 7448 232 152 1126 8557 605 2747 150 1352 3972 5232 8511 5966 6669 5582 5165 4991 5874 5424 6690 9712 7070 4452 5104 4884 6324 6382 ]
C [ 5586 5615 5798 4751 4733 5360 5713 5636 5617 3396 3307 5167 5609 8849 4681 5632 6109 2540 6498 9652 1259 17471 20307 11889 12589 20995 1955 1478 7210 3148 148 1249 9355 7170 3121 5237 4237 4672 4868 4636 3554 3199 4676 4473 4951 4887 3705 7384 7326 5250 ]
G [ 5280 5347 4982 4845 4666 4757 4962 5778 4306 6695 8075 6838 5819 3838 3985 4308 5022 6880 10176 1692 14686 1402 344 906 208 105 537 8040 12472 909 20661 16945 2180 4401 6938 5360 4789 5475 5895 6557 7602 8928 5177 3317 3990 4290 6716 5300 3644 5064 ]
T [ 5687 5680 5685 5880 6294 5870 5467 4673 7073 5761 4606 5115 5447 4865 6416 4017 7843 3242 2424 8843 3481 784 455 1287 8501 278 17912 3455 1243 14726 571 1984 6023 4727 2960 4967 5835 5801 5602 5346 4500 3979 4987 4028 5519 7901 6005 3962 4236 4834 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.01 -0.05 -0.03 -0.03 0.04 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.09 0.12 0.07 0.09 0.13 0.02 -0.02 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.04 -0.02 0.09 -0.02 -0.03 -0.00 -0.05 -0.01 -0.01 0.04 0.09 -0.02 0.13 0.09 -0.01 0.02 0.04 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.03 -0.04 -0.04 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages