Detailed information of deep learning profile BP000114.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000114.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR003SZZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.05 0.03 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4072 3600 3487 5190 6497 4583 3474 4279 3553 3982 4566 4791 4937 4925 4226 2613 4076 5257 1788 491 12708 1018 2960 15540 220 7405 1056 308 451 2673 7691 1789 2594 6714 3339 5552 4079 4663 4301 3867 4830 6136 3927 4632 5024 5542 4931 4800 4824 4854 ]
C [ 4272 3274 4753 5628 3832 3552 3011 4463 7332 6252 5703 5150 4786 4145 4576 5904 3769 1963 14258 17686 767 10554 6944 506 60 142 726 133 753 13391 921 9180 5970 4469 3746 3506 3230 5092 6043 7162 5989 3616 5005 4288 4144 4001 4157 4381 4602 4667 ]
G [ 4680 6438 6012 3352 4381 4348 4058 4158 2938 3278 3978 4206 3981 3704 4609 2726 6123 7892 1220 161 2645 6384 1424 1450 18073 10751 9785 17774 15793 710 8941 5683 2101 5259 4797 3958 7759 4845 4363 2658 2855 4913 4945 5027 4681 4087 4219 5083 4886 4815 ]
T [ 5442 5154 4214 4296 3756 5983 7923 5566 4643 4954 4219 4319 4762 5692 5055 7223 4498 3354 1200 128 2346 510 7138 970 113 168 6899 251 1469 1692 913 1814 7801 2024 6584 5450 3398 3866 3759 4779 4792 3801 4589 4519 4617 4836 5159 4202 4154 4130 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.00 -0.01 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.04 -0.03 -0.03 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.03 0.02 -0.01 0.09 0.13 -0.02 0.09 0.04 0.00 -0.01 -0.04 0.01 -0.02 -0.01 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.03 0.04 -0.01 -0.02 0.06 0.04 -0.01 0.02 0.13 0.10 0.07 0.12 0.09 -0.02 0.09 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.04 -0.03 -0.03 -0.06 0.02 -0.02 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 959

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 306

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 260

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 87

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 55

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages