Detailed information of deep learning profile BP000114.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000114.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR003SZZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.03 0.05 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4130 4154 4202 5159 4836 4617 4519 4589 3801 4792 4779 3759 3866 3398 5450 6584 2024 7801 1814 913 1692 1469 251 6899 168 113 970 7138 510 2346 128 1200 3354 4498 7223 5055 5692 4762 4319 4219 4954 4643 5566 7923 5983 3756 4296 4214 5154 5442 ]
C [ 4815 4886 5083 4219 4087 4681 5027 4945 4913 2855 2658 4363 4845 7759 3958 4797 5259 2101 5683 8941 710 15793 17774 9785 10751 18073 1450 1424 6384 2645 161 1220 7892 6123 2726 4609 3704 3981 4206 3978 3278 2938 4158 4058 4348 4381 3352 6012 6438 4680 ]
G [ 4667 4602 4381 4157 4001 4144 4288 5005 3616 5989 7162 6043 5092 3230 3506 3746 4469 5970 9180 921 13391 753 133 726 142 60 506 6944 10554 767 17686 14258 1963 3769 5904 4576 4145 4786 5150 5703 6252 7332 4463 3011 3552 3832 5628 4753 3274 4272 ]
T [ 4854 4824 4800 4931 5542 5024 4632 3927 6136 4830 3867 4301 4663 4079 5552 3339 6714 2594 1789 7691 2673 451 308 1056 7405 220 15540 2960 1018 12708 491 1788 5257 4076 2613 4226 4925 4937 4791 4566 3982 3553 4279 3474 4583 6497 5190 3487 3600 4072 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.02 0.02 -0.06 -0.03 -0.03 0.04 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.09 -0.02 0.09 0.12 0.07 0.10 0.13 0.02 -0.01 0.04 0.06 -0.02 -0.01 0.04 0.03 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.01 -0.02 0.01 -0.04 -0.01 0.00 0.04 0.09 -0.02 0.13 0.09 -0.01 0.02 0.03 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.03 -0.03 -0.04 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.01 -0.00 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 959

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 331

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 306

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 260

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 199

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 87

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 55

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages